Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR133A2-201ENST00000347538 102 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 MIR551B-201ENST00000384984 96 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 DPPA2P2-201ENST00000418220 897 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AC108479.1-201ENST00000431142 427 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 RN7SL254P-201ENST00000460609 284 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AC023389.2-201ENST00000580031 955 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 MIR6133-201ENST00000617057 108 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AC007938.2-201ENST00000604666 2634 ntBASIC6.18□□□□□ -1.42
CCDC42Q96M95 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 ABCC13-202ENST00000463099 3842 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AL034546.1-201ENST00000623740 3693 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 RN7SKP145-201ENST00000363291 303 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 THEM7P-201ENST00000419556 672 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 RPL12P49-201ENST00000441100 121 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 EIF5AP4-201ENST00000441206 465 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC007383.1-201ENST00000445875 636 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 HMGB1P7-201ENST00000450921 612 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 RPS23P2-201ENST00000463671 415 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 SNRPCP11-201ENST00000492453 205 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC092332.1-201ENST00000563684 829 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 RN7SL230P-201ENST00000580835 303 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC005244.1-201ENST00000582566 339 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC022001.1-201ENST00000605193 268 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AL136131.3-201ENST00000607600 188 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC018690.1-201ENST00000608144 626 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC016590.3-201ENST00000611171 753 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 AC015819.1-201ENST00000613588 663 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC42Q96M95 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 HSPD1P7-201ENST00000447985 1686 ntBASIC6.17□□□□□ -1.42
CCDC42Q96M95 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
CCDC42Q96M95 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC125336.1-201ENST00000508893 2827 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 YWHAZP6-201ENST00000399764 738 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC096921.1-201ENST00000411661 375 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 RPS14P4-201ENST00000415880 418 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 GAPDHP75-201ENST00000433910 943 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 TUBB4BP6-201ENST00000437576 479 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 DUTP1-201ENST00000493631 470 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 RN7SL362P-201ENST00000494228 267 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC105420.1-201ENST00000504389 582 ntBASIC6.16□□□□□ -1.42
CCDC42Q96M95 AC113367.2-201ENST00000505749 160 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms