Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL353796.1-201ENST00000561542 3241 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
FOXA3P55318 AP004607.3-201ENST00000530354 3915 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
FOXA3P55318 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 U3.28-201ENST00000391249 210 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 RNA5SP156-201ENST00000410250 110 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 RN7SKP144-201ENST00000411108 279 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 RPS12P17-201ENST00000438591 377 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC015983.1-201ENST00000441577 373 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 RPS7P3-201ENST00000443360 580 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC010240.2-201ENST00000445363 1205 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 ZNF619P1-201ENST00000446539 752 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 RPS10P28-201ENST00000480396 498 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 RPS7P6-201ENST00000485777 579 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC105391.1-201ENST00000503155 1045 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC105384.2-201ENST00000508433 640 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 MINOS1P4-201ENST00000515470 318 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 CYCSP25-201ENST00000525280 316 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC110056.1-201ENST00000525759 911 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC021269.1-201ENST00000526860 705 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AP002004.1-206ENST00000532441 876 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 OR9G2P-201ENST00000533326 880 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 NMNAT1P5-201ENST00000559657 841 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC106730.2-201ENST00000566641 540 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC006120.1-201ENST00000579375 546 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC063977.7-201ENST00000594454 337 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC145423.1-201ENST00000605712 336 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 MIR6811-201ENST00000620409 58 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 MIR6807-201ENST00000621968 92 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AL357562.1-201ENST00000624911 609 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC006453.3-201ENST00000635891 377 ntBASIC4.29□□□□□ -1.72
FOXA3P55318 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 ZCWPW2-201ENST00000383768 1716 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 AC009220.2-201ENST00000489759 1751 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 MUC2-202ENST00000613187 4845 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 SNORA48.4-201ENST00000391089 134 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 RN7SKP205-201ENST00000410999 307 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 RNA5SP155-201ENST00000411154 129 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC4.28□□□□□ -1.72
FOXA3P55318 MTND2P12-201ENST00000417560 1252 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC006509.1-201ENST00000420788 634 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 OSTCP4-201ENST00000424397 449 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC094019.1-201ENST00000434678 472 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 GAPDHP37-201ENST00000442317 968 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 CXCR2P1-202ENST00000443392 1074 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 SEPT7P3-201ENST00000455017 621 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 RN7SL372P-201ENST00000461982 298 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 RN7SL655P-201ENST00000486087 298 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 AC021193.1-201ENST00000511607 420 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms