Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC005725.1-201ENST00000577346 2607 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
COL4A4P53420 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.1□□□□□ -1.43
COL4A4P53420 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL4A4P53420 RPS26P13-201ENST00000419030 330 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 SLC35E1P1-201ENST00000419313 864 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 EIF2S2P3-201ENST00000428356 999 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 RN7SL97P-201ENST00000486780 299 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC072052.1-201ENST00000496556 306 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.1□□□□□ -1.43
COL4A4P53420 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.1□□□□□ -1.43
COL4A4P53420 AL049779.2-201ENST00000553847 315 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 MIR4697-201ENST00000582977 78 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 uc_338.18-201ENST00000615451 175 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AP003789.1-201ENST00000617737 605 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL4A4P53420 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 SNORD1C-201ENST00000363315 78 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC009804.1-201ENST00000400949 179 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RPL23AP17-201ENST00000401064 499 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RNU4-64P-201ENST00000410795 131 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RMRPP5-201ENST00000411156 267 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RAB28P1-201ENST00000411517 641 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RPL26P29-201ENST00000415623 438 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC6.09□□□□□ -1.43
COL4A4P53420 AL365220.1-201ENST00000432923 399 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RN7SL352P-201ENST00000466002 277 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 RPL7P39-201ENST00000481157 744 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.09□□□□□ -1.43
COL4A4P53420 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.09□□□□□ -1.43
COL4A4P53420 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.09□□□□□ -1.43
COL4A4P53420 AL163952.1-202ENST00000569625 600 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.09□□□□□ -1.43
COL4A4P53420 AC008115.3-201ENST00000614874 549 ntBASIC6.09□□□□□ -1.43
COL4A4P53420 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC6.09□□□□□ -1.43
COL4A4P53420 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A4P53420 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL4A4P53420 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
COL4A4P53420 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
COL4A4P53420 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL4A4P53420 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 ZNF840P-201ENST00000504759 1996 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL4A4P53420 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 FAR2P2-201ENST00000413041 594 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 FAR2P4-202ENST00000425399 584 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 GSTA7P-201ENST00000438425 448 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC6.08□□□□□ -1.44
COL4A4P53420 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 AC079841.1-201ENST00000481228 950 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AC105384.2-201ENST00000508433 640 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AL121594.2-201ENST00000541658 472 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AC137768.1-201ENST00000549998 553 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 NMNAT1P5-201ENST00000559657 841 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AC015720.2-201ENST00000567709 334 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AC133644.2-201ENST00000608142 540 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms