Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC7.59□□□□□ -1.19
HOXC9P31274 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.59□□□□□ -1.19
HOXC9P31274 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.59□□□□□ -1.19
HOXC9P31274 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 SNORA74A-201ENST00000364089 198 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 SNORA70-201ENST00000384436 135 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 RPS6P23-201ENST00000413224 722 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 EEF1B2P5-201ENST00000444820 548 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.59□□□□□ -1.19
HOXC9P31274 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.59□□□□□ -1.19
HOXC9P31274 DPPA3P2-202ENST00000557188 1219 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 AC008536.1-201ENST00000602872 669 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 AL118522.2-201ENST00000616045 615 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 AC118658.2-201ENST00000618697 459 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 MIR6730-201ENST00000622213 67 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
HOXC9P31274 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 AL161756.3-201ENST00000641216 2071 ntBASIC7.59□□□□□ -1.19
HOXC9P31274 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
HOXC9P31274 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.59□□□□□ -1.19
HOXC9P31274 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HOXC9P31274 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.2
HOXC9P31274 AP000866.6-201ENST00000638898 3579 ntBASIC7.59□□□□□ -1.2
HOXC9P31274 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.2
HOXC9P31274 AC114876.1-201ENST00000490962 1366 ntBASIC7.59□□□□□ -1.2
HOXC9P31274 AC005224.3-201ENST00000584683 2140 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 AC053481.2-202ENST00000582394 1500 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC7.58□□□□□ -1.2
HOXC9P31274 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.58□□□□□ -1.2
HOXC9P31274 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.58□□□□□ -1.2
HOXC9P31274 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC7.58□□□□□ -1.2
HOXC9P31274 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.58□□□□□ -1.2
HOXC9P31274 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC7.58□□□□□ -1.2
HOXC9P31274 RN7SKP273-201ENST00000411392 314 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC7.58□□□□□ -1.2
HOXC9P31274 AL139148.1-201ENST00000427122 680 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.58□□□□□ -1.2
HOXC9P31274 RPL7L1P9-201ENST00000431298 745 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.58□□□□□ -1.2
HOXC9P31274 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.58□□□□□ -1.2
HOXC9P31274 DUTP1-201ENST00000493631 470 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.58□□□□□ -1.2
HOXC9P31274 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC7.58□□□□□ -1.2
HOXC9P31274 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.58□□□□□ -1.2
HOXC9P31274 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC7.58□□□□□ -1.2
HOXC9P31274 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.58□□□□□ -1.2
HOXC9P31274 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 AC012616.1-201ENST00000600294 197 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 MIR7155-201ENST00000615925 56 ntBASIC7.58□□□□□ -1.2
HOXC9P31274 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
HOXC9P31274 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HOXC9P31274 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC7.57□□□□□ -1.2
HOXC9P31274 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.57□□□□□ -1.2
HOXC9P31274 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.57□□□□□ -1.2
HOXC9P31274 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
HOXC9P31274 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
HOXC9P31274 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC7.57□□□□□ -1.2
HOXC9P31274 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.57□□□□□ -1.2
HOXC9P31274 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.57□□□□□ -1.2
HOXC9P31274 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 IGLV3-24-201ENST00000517477 197 ntBASIC7.57□□□□□ -1.2
HOXC9P31274 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.57□□□□□ -1.2
HOXC9P31274 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC7.57□□□□□ -1.2
HOXC9P31274 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC7.57□□□□□ -1.2
HOXC9P31274 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC7.57□□□□□ -1.2
HOXC9P31274 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.57□□□□□ -1.2
HOXC9P31274 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HOXC9P31274 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.57□□□□□ -1.2
HOXC9P31274 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.56□□□□□ -1.2
HOXC9P31274 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.56□□□□□ -1.2
HOXC9P31274 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.56□□□□□ -1.2
HOXC9P31274 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
HOXC9P31274 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HOXC9P31274 RNU1-77P-201ENST00000390868 162 ntBASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms