Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CMKLR1-202ENST00000412676 5110 ntAPPRIS ALT2 TSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC00298-201ENST00000426969 2236 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 SMCP-201ENST00000368765 775 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 SNORA69-201ENST00000383895 132 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC084880.1-201ENST00000392530 545 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC02449-202ENST00000399866 517 ntTSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 MIR548I3-201ENST00000408378 149 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 MIR548I1-201ENST00000408810 149 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 RNU6-1068P-201ENST00000410958 103 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 MICG-208ENST00000416822 132 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 PUDPP1-201ENST00000421058 495 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 GAPDHP49-201ENST00000421421 961 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC090044.1-201ENST00000423193 497 ntTSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC8.44□□□□□ -1.06
COL9A1P20849 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 RNU6-406P-201ENST00000516470 107 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC124067.1-201ENST00000517897 169 ntTSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 AC022695.2-201ENST00000518042 768 ntTSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 AC008429.4-201ENST00000521201 182 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC138832.1-201ENST00000522871 556 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 RNF185-AS1-201ENST00000526089 353 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 KCTD21-AS1-204ENST00000528468 554 ntTSL 4 BASIC8.44□□□□□ -1.06
COL9A1P20849 AP003119.1-201ENST00000533437 538 ntTSL 4 BASIC8.44□□□□□ -1.06
COL9A1P20849 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC8.44□□□□□ -1.06
COL9A1P20849 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
COL9A1P20849 SUB1P2-201ENST00000556401 297 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC8.44□□□□□ -1.06
COL9A1P20849 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 AL161734.1-201ENST00000609720 557 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 AC084781.2-201ENST00000615568 161 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 Metazoa_SRP.29-201ENST00000616220 280 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 MIR6729-201ENST00000618194 65 ntBASIC8.44□□□□□ -1.06
COL9A1P20849 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
COL9A1P20849 ZNF611-206ENST00000595798 2395 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 FHL1-230ENST00000630084 1335 ntTSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 ABCF2-202ENST00000287844 3546 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 NAALAD2-210ENST00000534061 3600 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 LUCAT1-203ENST00000513626 2672 ntTSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 MTMR2-204ENST00000409459 3420 ntTSL 5 BASIC8.44□□□□□ -1.06
COL9A1P20849 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC8.44□□□□□ -1.06
COL9A1P20849 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 PPFIA2-216ENST00000549396 5363 ntAPPRIS P4 TSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 CDK15-203ENST00000434439 2240 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
COL9A1P20849 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 AC025283.2-203ENST00000618352 2905 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
COL9A1P20849 MELK-206ENST00000536329 2283 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 LINC00662-203ENST00000586954 2254 ntTSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 ZNF583-202ENST00000333201 4916 ntAPPRIS P1 TSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 ANKS1B-213ENST00000549025 2973 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 MLANA-203ENST00000381477 2415 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 ZNF333-201ENST00000292530 4672 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 MAP3K8-202ENST00000375321 2518 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 NXPE3-207ENST00000616286 1832 ntTSL 5 BASIC8.43□□□□□ -1.06
COL9A1P20849 AF228730.7-203ENST00000641436 1804 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 SERPINE2-203ENST00000409840 2569 ntAPPRIS ALT1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 TBCK-203ENST00000394706 3349 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 KIF9-AS1-201ENST00000429315 4898 ntTSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 LINC00561-201ENST00000565815 2738 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 DDX18P6-201ENST00000450119 1997 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 MYO1H-201ENST00000310903 4364 ntTSL 5 BASIC8.43□□□□□ -1.06
COL9A1P20849 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 GNG5P1-201ENST00000255500 204 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 Y_RNA.28-201ENST00000362554 111 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 FAM107B-202ENST00000378458 1284 ntAPPRIS P1 TSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 AL592114.1-201ENST00000403842 483 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AL953862.1-201ENST00000423016 168 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 OR51AB1P-201ENST00000429046 620 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
COL9A1P20849 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 RPL23AP16-201ENST00000441715 421 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 AL606490.1-201ENST00000452266 765 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 RPS27AP17-201ENST00000463344 455 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AC010307.1-201ENST00000467206 836 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC8.43□□□□□ -1.06
COL9A1P20849 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC8.43□□□□□ -1.06
COL9A1P20849 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 AC034232.2-201ENST00000511579 917 ntTSL 2 BASIC8.43□□□□□ -1.06
COL9A1P20849 SNORD60.2-201ENST00000516883 86 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 Y_RNA.718-201ENST00000517110 102 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC8.43□□□□□ -1.06
COL9A1P20849 HMGB1P41-201ENST00000520234 440 ntBASIC8.43□□□□□ -1.06
COL9A1P20849 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC8.43□□□□□ -1.06
COL9A1P20849 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC8.43□□□□□ -1.06
COL9A1P20849 SNRPGP18-201ENST00000553000 214 ntBASIC8.43□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms