Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.63□□□□□ -1.51
CLDN9O95484 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.63□□□□□ -1.51
CLDN9O95484 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.63□□□□□ -1.51
CLDN9O95484 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.63□□□□□ -1.51
CLDN9O95484 AC091078.2-201ENST00000557145 559 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.63□□□□□ -1.51
CLDN9O95484 AC091167.5-201ENST00000605689 894 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 NANOGP3-201ENST00000605855 286 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 AP001437.1-201ENST00000608783 456 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 AP001052.1-201ENST00000626421 99 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 OR11H2-202ENST00000641517 1085 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.63□□□□□ -1.51
CLDN9O95484 AC117409.1-201ENST00000470499 1310 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CLDN9O95484 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
CLDN9O95484 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CLDN9O95484 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
CLDN9O95484 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CLDN9O95484 AC138907.8-201ENST00000623981 2256 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
CLDN9O95484 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
CLDN9O95484 CASC19-238ENST00000641523 1558 ntBASIC5.63□□□□□ -1.51
CLDN9O95484 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CLDN9O95484 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 MFSD8-219ENST00000641228 2559 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.62□□□□□ -1.51
CLDN9O95484 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 AC018628.1-201ENST00000624147 3819 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 AC004076.2-201ENST00000620532 3323 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CLDN9O95484 RNA5SP91-201ENST00000390902 119 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 NPM1P38-201ENST00000403835 865 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 MIR1275-201ENST00000408770 80 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC019205.1-201ENST00000421830 730 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 RN7SL168P-201ENST00000463821 279 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC105384.2-201ENST00000508433 640 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 GAPDHP71-201ENST00000511530 1003 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 SETP21-201ENST00000514799 892 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 WBP1LP3-201ENST00000523033 208 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 AC024405.1-201ENST00000532521 1042 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 AL845552.1-201ENST00000556820 323 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 ZNF322P1-201ENST00000568013 1209 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 MIR4776-2-201ENST00000580204 80 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.62□□□□□ -1.51
CLDN9O95484 AC025857.2-201ENST00000602711 238 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 HIRAP1-201ENST00000605318 787 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.62□□□□□ -1.51
CLDN9O95484 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 AC092070.2-203ENST00000598377 3644 ntBASIC5.62□□□□□ -1.51
CLDN9O95484 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CLDN9O95484 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.62□□□□□ -1.51
CLDN9O95484 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.62□□□□□ -1.51
CLDN9O95484 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CLDN9O95484 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CLDN9O95484 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CLDN9O95484 RNFT1P3-201ENST00000340898 1052 ntBASIC5.61□□□□□ -1.51
CLDN9O95484 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 RNGTTP1-201ENST00000420965 728 ntBASIC5.61□□□□□ -1.51
CLDN9O95484 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.61□□□□□ -1.51
CLDN9O95484 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.61□□□□□ -1.51
CLDN9O95484 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.61□□□□□ -1.51
CLDN9O95484 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.61□□□□□ -1.51
CLDN9O95484 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.61□□□□□ -1.51
CLDN9O95484 EIF5AP4-201ENST00000441206 465 ntBASIC5.61□□□□□ -1.51
CLDN9O95484 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.61□□□□□ -1.51
CLDN9O95484 RPL5P10-201ENST00000445207 894 ntBASIC5.61□□□□□ -1.51
CLDN9O95484 MEMO1P4-201ENST00000453590 386 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms