Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AL136520.1-201ENST00000600311 1322 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 MSL3P1-202ENST00000440028 1468 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
FOXN3O00409 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 SNORA70.9-201ENST00000384370 135 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 MIR191-201ENST00000384873 92 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AL034417.1-201ENST00000399343 800 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 RPL23AP17-201ENST00000401064 499 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 RN7SKP108-201ENST00000411367 328 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 FAM183DP-201ENST00000421987 399 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AL731534.1-201ENST00000434711 269 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 AL513321.1-201ENST00000441175 761 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 Z99127.2-201ENST00000441426 334 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 XKRY2-201ENST00000442362 1093 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 RPL23AP60-201ENST00000450011 454 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 KF459542.1-201ENST00000450908 553 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 RAB28P2-201ENST00000454299 641 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC6.56□□□□□ -1.36
FOXN3O00409 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC093663.2-201ENST00000484625 313 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC6.56□□□□□ -1.36
FOXN3O00409 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC090958.1-201ENST00000511122 351 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 HMGN1P15-201ENST00000513870 295 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.56□□□□□ -1.36
FOXN3O00409 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 OSBPL9P3-201ENST00000534523 595 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 AC005479.3-201ENST00000602790 431 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 LSM1P2-201ENST00000604911 322 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.56□□□□□ -1.36
FOXN3O00409 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 RMST_5.1-201ENST00000618704 126 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 MIR6813-201ENST00000621638 56 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AL359742.1-201ENST00000622497 540 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
FOXN3O00409 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
FOXN3O00409 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 AL356317.1-201ENST00000396110 1436 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
FOXN3O00409 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.56□□□□□ -1.36
FOXN3O00409 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
FOXN3O00409 IMMTP1-201ENST00000435590 2219 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 AC119674.1-202ENST00000641333 1860 ntBASIC6.56□□□□□ -1.36
FOXN3O00409 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.56□□□□□ -1.36
FOXN3O00409 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 AP000432.2-201ENST00000624164 2048 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
FOXN3O00409 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 AL022323.4-201ENST00000623980 13120 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
FOXN3O00409 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 RNA5SP110-201ENST00000362638 115 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 AL355143.1-201ENST00000407101 841 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 SNORA77.2-201ENST00000408571 112 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 RN7SKP144-201ENST00000411108 279 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.55□□□□□ -1.36
FOXN3O00409 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.55□□□□□ -1.36
FOXN3O00409 REREP1Y-201ENST00000422655 198 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
FOXN3O00409 PTP4A1P3-201ENST00000433661 420 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 REREP2Y-201ENST00000439103 200 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.55□□□□□ -1.36
FOXN3O00409 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.55□□□□□ -1.36
FOXN3O00409 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.55□□□□□ -1.36
FOXN3O00409 RN7SL352P-201ENST00000466002 277 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC6.55□□□□□ -1.36
FOXN3O00409 RPL12P30-201ENST00000488389 499 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 CAB39P1-201ENST00000502277 460 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 AC106822.1-201ENST00000502647 526 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 SNX18P25-201ENST00000510539 758 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.55□□□□□ -1.36
FOXN3O00409 VTA1P2-201ENST00000520205 911 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC6.55□□□□□ -1.36
FOXN3O00409 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.55□□□□□ -1.36
FOXN3O00409 MT1CP-201ENST00000567054 174 ntBASIC6.55□□□□□ -1.36
FOXN3O00409 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms