Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FAR2P4-202ENST00000425399 584 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 HMGB1P32-201ENST00000425971 565 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 FAR2P1-206ENST00000449736 709 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC083795.1-201ENST00000491760 320 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC109481.1-201ENST00000509173 282 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 MIR3691-201ENST00000578066 90 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC110716.2-201ENST00000563865 3945 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AC007842.1-201ENST00000597336 2039 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 RN7SKP279-201ENST00000411383 298 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 FABP5P2-201ENST00000439042 408 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 RN7SL808P-201ENST00000496066 299 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 HMGB1P42-201ENST00000532126 553 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 CLMN-206ENST00000556441 452 ntTSL 5 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 OR7A8P-201ENST00000595427 913 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 TAS2R6P-201ENST00000605022 826 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC025470.1-201ENST00000510053 2032 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC007998.4-201ENST00000612496 2533 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 MIR223-201ENST00000385204 110 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 EEF1A1P29-201ENST00000416082 1096 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC011742.2-201ENST00000443818 352 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 FRG2FP-204ENST00000453982 852 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 TPM3P3-201ENST00000521343 354 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC004825.1-201ENST00000555068 586 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 SUGT1P3-202ENST00000604259 383 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 AC105105.5-201ENST00000622635 1294 ntBASIC11.12□□□□□ -0.63
SHROOM4Q9ULL8 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 YES1P1-201ENST00000418510 1628 ntBASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 RNA5SP211-201ENST00000365516 117 ntBASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 AL672167.3-201ENST00000465951 960 ntBASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 AC137695.1-201ENST00000604126 489 ntBASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 HCFC2P1-201ENST00000392864 1592 ntBASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
SHROOM4Q9ULL8 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AL353763.1-201ENST00000624467 1628 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AC119674.1-213ENST00000641177 1386 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 RAB28P1-201ENST00000411517 641 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AC005033.1-201ENST00000428904 813 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 RPSAP50-201ENST00000481955 852 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AC021146.10-201ENST00000515628 706 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 RN7SKP66-201ENST00000516681 231 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 MRPS16P1-201ENST00000523462 412 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 AC022832.1-201ENST00000530718 645 ntBASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
SHROOM4Q9ULL8 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC112255.1-201ENST00000624070 2493 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AP001157.1-201ENST00000550837 2339 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms