Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RNU6-386P-201ENST00000362650 107 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 MIR1275-201ENST00000408770 80 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 EEF1B2P8-201ENST00000414101 671 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AJ239321.1-201ENST00000424255 564 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC073508.1-201ENST00000428866 656 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CXCR2P1-202ENST00000443392 1074 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 MTND2P25-201ENST00000449028 610 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CCNJP2-201ENST00000457810 1163 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC093763.2-201ENST00000505334 1223 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ZNF519P4-201ENST00000514008 125 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RNA5SP206-201ENST00000516703 121 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC073581.1-201ENST00000519036 575 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC036111.2-201ENST00000533247 901 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC002519.2-203ENST00000567043 837 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC134669.1-201ENST00000581275 672 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC006116.5-201ENST00000591936 559 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC005776.1-201ENST00000603164 290 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RNU6-84P-201ENST00000607737 102 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AF129408.1-201ENST00000608767 431 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CR589904.2-201ENST00000612533 440 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 MIR6721-201ENST00000617181 87 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AC008691.1-209ENST00000642094 814 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AL731556.1-201ENST00000394628 3711 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 Y_RNA.62-201ENST00000362840 99 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 RNA5SP279-201ENST00000365513 117 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 U3.43-201ENST00000410734 213 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AL035422.1-201ENST00000414193 397 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 OR51A6P-201ENST00000418680 1004 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 MRPS33P4-201ENST00000434892 317 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AL645936.1-201ENST00000441979 518 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 RPSAP40-201ENST00000442343 891 ntBASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC6.38□□□□□ -1.39
DKK3Q9UBP4 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms