Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ATG10-208ENST00000513634 618 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CYCSP1-201ENST00000604815 315 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL445670.1-201ENST00000618889 801 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC109780.1-201ENST00000451768 1344 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RNA5SP375-201ENST00000362975 119 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 HMGB1P20-201ENST00000402555 677 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC245060.4-201ENST00000413293 1121 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MRPL53P1-201ENST00000414323 319 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL627308.1-201ENST00000435693 821 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RPS23P1-201ENST00000491662 432 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR10G5P-201ENST00000532733 358 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAM25E-202ENST00000608562 189 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC127024.8-201ENST00000623719 2094 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC105235.1-201ENST00000623208 1816 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RNVU1-6-201ENST00000364688 164 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 EIF2S2P3-201ENST00000428356 999 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC012075.1-201ENST00000436549 580 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC093763.2-201ENST00000505334 1223 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AP001496.3-201ENST00000580230 913 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC007683.2-201ENST00000624681 714 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC012254.3-201ENST00000591183 2117 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RNU1-46P-201ENST00000384425 164 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RPL36P18-201ENST00000419316 318 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL606490.1-201ENST00000452266 765 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CBX1P2-201ENST00000453841 458 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC105420.1-201ENST00000504389 582 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AP003396.4-201ENST00000527574 265 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SUGT1P3-202ENST00000604259 383 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC020765.1-201ENST00000604296 328 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL450226.2-201ENST00000622913 439 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
SYNE1Q8NF91 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SYNE1Q8NF91 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SYNE1Q8NF91 RN7SKP166-201ENST00000410812 305 ntBASIC1.8□□□□□ -2.12
SYNE1Q8NF91 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SYNE1Q8NF91 MYO5BP2-201ENST00000449815 1277 ntBASIC1.8□□□□□ -2.12
SYNE1Q8NF91 AC009963.2-201ENST00000453431 138 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms