Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 OR4A40P-201ENST00000533878 948 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA1P49639 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 AC009120.3-201ENST00000563335 499 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA1P49639 MIR4312-201ENST00000579909 76 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA1P49639 AL671309.1-201ENST00000603750 544 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC012511.1-201ENST00000608140 449 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 MIR6731-201ENST00000614863 72 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 AC007671.1-201ENST00000616957 830 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC073488.9-201ENST00000631601 754 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA1P49639 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 SMG1P5-202ENST00000529428 4219 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 SMG1P2-201ENST00000566127 4221 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.14□□□□□ -1.59
HOXA1P49639 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA1P49639 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA1P49639 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HOXA1P49639 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA1P49639 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AC005005.4-201ENST00000623789 16698 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 MIR421-201ENST00000365696 85 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AL356057.1-202ENST00000402263 756 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AL096800.1-201ENST00000405326 893 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXA1P49639 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 CENPN-204ENST00000428963 971 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC099670.2-201ENST00000435130 321 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXA1P49639 RN7SL221P-201ENST00000466190 281 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 RPL7L1P7-201ENST00000509986 724 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 SCARNA5-201ENST00000516201 276 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 COX6B1P4-201ENST00000519826 484 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AC008429.4-201ENST00000521201 182 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 IGHVII-49-1-201ENST00000521760 224 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 RBMS2P1-201ENST00000525031 1226 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXA1P49639 CKS1BP1-201ENST00000555221 240 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AC091932.1-201ENST00000569381 427 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 AP003117.1-201ENST00000602771 554 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AL353807.4-201ENST00000604995 257 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 AC110792.4-201ENST00000609843 298 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AC009283.1-201ENST00000615852 645 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXA1P49639 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 QRSL1P3-201ENST00000552666 1316 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AL136520.1-201ENST00000600311 1322 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXA1P49639 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
HOXA1P49639 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 AC239868.2-201ENST00000564237 4527 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXA1P49639 RBPJP6-201ENST00000411556 1431 ntBASIC5.13□□□□□ -1.59
HOXA1P49639 AC093591.2-201ENST00000565254 3843 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms