Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RN7SL104P-201ENST00000498686 293 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC112184.1-201ENST00000505179 312 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC018797.1-201ENST00000510791 255 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC021146.10-201ENST00000515628 706 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 RN7SKP67-201ENST00000515905 235 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 OR8X1P-201ENST00000534542 869 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 MIR6862-1-201ENST00000613016 70 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 MIR6862-2-201ENST00000614755 70 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 OR4G3P-201ENST00000633500 913 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 OR7E91P-202ENST00000642062 1198 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC027279.4-201ENST00000624371 2072 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 AC105235.1-201ENST00000623208 1816 ntBASIC6.41□□□□□ -1.38
DKK3Q9UBP4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
DKK3Q9UBP4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 FAM32BP-201ENST00000344033 333 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 RNA5SP232-201ENST00000364144 119 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 YWHAZP6-201ENST00000399764 738 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC112492.2-201ENST00000432774 1030 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC094019.1-201ENST00000434678 472 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 GAPDHP59-201ENST00000435908 267 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 NPM1P48-201ENST00000436002 853 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 SOCS5P1-201ENST00000440415 949 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 VN1R38P-201ENST00000450265 887 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 RN7SL369P-201ENST00000477138 299 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 RN7SL326P-201ENST00000477493 296 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 RN7SL214P-201ENST00000487317 265 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC112484.3-201ENST00000505910 329 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC026407.1-201ENST00000518369 204 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AP001372.4-201ENST00000524889 472 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC005332.4-201ENST00000592752 579 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC133794.1-201ENST00000602731 914 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 ABI1P1-201ENST00000603375 1120 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC073592.6-201ENST00000624271 415 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AP003485.1-201ENST00000625093 753 ntBASIC6.4□□□□□ -1.38
DKK3Q9UBP4 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.4□□□□□ -1.38
DKK3Q9UBP4 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 AC232271.1-201ENST00000602455 2715 ntBASIC6.4□□□□□ -1.39
DKK3Q9UBP4 THAP12P8-201ENST00000447914 2115 ntBASIC6.4□□□□□ -1.39
DKK3Q9UBP4 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 MTCO1P7-201ENST00000419523 1542 ntBASIC6.4□□□□□ -1.39
DKK3Q9UBP4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
DKK3Q9UBP4 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AP002512.4-202ENST00000641599 4530 ntBASIC6.39□□□□□ -1.39
DKK3Q9UBP4 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
DKK3Q9UBP4 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms