Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC00561-201ENST00000565815 2738 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 ULBP1-201ENST00000229708 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC104806.2-201ENST00000502400 1991 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC003985.2-201ENST00000562268 1669 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC005722.2-201ENST00000577087 3370 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 ADGRF1-201ENST00000283297 2142 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 RNU6-483P-201ENST00000384088 108 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RNU6-738P-201ENST00000384531 106 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 MIR217-201ENST00000384817 110 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RNU6-1300P-201ENST00000391046 108 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC074117.1-203ENST00000412749 399 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-CQ95604 HCG25-217ENST00000422366 702 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AL353729.1-201ENST00000425044 720 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC127526.2-201ENST00000426436 775 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 Z93242.1-201ENST00000427102 353 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-CQ95604 RPL37P21-201ENST00000435890 276 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RPL14P5-201ENST00000436474 730 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC064862.5-201ENST00000440618 334 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 PGBD4P3-201ENST00000440731 581 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 MRPS21P1-201ENST00000453850 223 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC8.19□□□□□ -1.1
HLA-CQ95604 CTSLP6-201ENST00000458273 1002 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RN7SL168P-201ENST00000463821 279 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RN7SL251P-201ENST00000464175 297 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC099521.1-201ENST00000482557 334 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RPL35P6-201ENST00000490024 372 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC010486.1-201ENST00000511793 424 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC8.19□□□□□ -1.1
HLA-CQ95604 MTF2-213ENST00000540243 3845 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 RN7SL32P-201ENST00000580514 281 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AL358335.3-201ENST00000604678 327 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 RNVU1-19-201ENST00000613023 167 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 AL109918.1-201ENST00000602367 3039 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HLA-CQ95604 CTAGE5-205ENST00000348007 2762 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 NPEPPS-215ENST00000530173 2864 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 SIRT5-205ENST00000606117 3922 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 MPEG1-201ENST00000361050 4442 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HLA-CQ95604 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 TNIK-201ENST00000284483 4059 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
HLA-CQ95604 NOS2-201ENST00000313735 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 MAPK10-325ENST00000641537 2623 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 SERPINB6-202ENST00000380520 3265 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 CPNE4-210ENST00000512332 2230 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 CDY11P-201ENST00000447168 1651 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 COPS4-201ENST00000264389 1744 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 DDX50P1-201ENST00000438163 2400 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 SPATA31A3-201ENST00000428649 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 SPATA31A5-201ENST00000437823 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 DAZL-202ENST00000399444 3050 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 Y_RNA.481-201ENST00000384373 102 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 MIR191-201ENST00000384873 92 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 PTMAP8-201ENST00000397729 342 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 RPS24P12-201ENST00000402084 394 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 AC127537.1-201ENST00000418183 748 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC8.18□□□□□ -1.1
HLA-CQ95604 FDPSP1-201ENST00000424976 1071 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 AL365356.3-201ENST00000427341 657 ntTSL 3 BASIC8.18□□□□□ -1.1
HLA-CQ95604 BX890604.2-201ENST00000427883 474 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 FTO-202ENST00000431610 707 ntTSL 3 BASIC8.18□□□□□ -1.1
HLA-CQ95604 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC8.18□□□□□ -1.1
HLA-CQ95604 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC8.18□□□□□ -1.1
HLA-CQ95604 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC8.18□□□□□ -1.1
HLA-CQ95604 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC8.18□□□□□ -1.1
HLA-CQ95604 ARL2BPP7-201ENST00000446421 490 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HLA-CQ95604 AC108463.1-201ENST00000450258 347 ntBASIC8.18□□□□□ -1.1
HLA-CQ95604 AC019080.2-201ENST00000453859 394 ntBASIC8.18□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms