Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC005042.1-201ENST00000393397 800 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AL096829.1-201ENST00000413677 457 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 HIGD1AP16-201ENST00000450986 258 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC091078.2-201ENST00000557145 559 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC010547.6-201ENST00000571789 193 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC012146.2-201ENST00000576545 416 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AL445649.1-201ENST00000615941 691 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC015689.2-201ENST00000528172 1738 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AL669831.5-218ENST00000591702 1873 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC1.82□□□□□ -2.12
SYNE1Q8NF91 AC105749.1-201ENST00000631338 2008 ntBASIC1.82□□□□□ -2.12
SYNE1Q8NF91 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 U3.2-201ENST00000362981 210 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RNA5SP132-201ENST00000364725 118 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC023141.3-201ENST00000436698 278 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC008638.1-201ENST00000506035 866 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC104695.2-201ENST00000605056 775 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ERMN-202ENST00000409216 746 ntTSL 4 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RN7SL165P-201ENST00000477476 291 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC106800.3-201ENST00000511389 308 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 Y_RNA.710-201ENST00000516975 110 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL359091.1-201ENST00000449048 1734 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 EEF1A1P30-201ENST00000429708 1315 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 OR5W1P-201ENST00000423705 938 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 DUTP4-201ENST00000424782 475 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AL445466.1-201ENST00000448432 357 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 FAR2P1-206ENST00000449736 709 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RPS4XP1-201ENST00000482189 787 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AP001858.2-201ENST00000536213 601 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC106785.4-201ENST00000569492 412 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MIR4776-2-201ENST00000580204 80 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MIR1269B-201ENST00000580405 75 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC092681.3-201ENST00000609463 678 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 AC073365.1-203ENST00000641055 1992 ntBASIC1.81□□□□□ -2.12
SYNE1Q8NF91 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SYNE1Q8NF91 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms