Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 TMA16P2-201ENST00000413187 601 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 HMGA1P8-201ENST00000414130 321 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC006335.2-201ENST00000437993 330 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 RPS17P15-201ENST00000475609 349 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC087672.1-201ENST00000479876 766 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 IGLV2-34-201ENST00000490007 283 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 FTH1P8-201ENST00000498161 514 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 MIR4480-201ENST00000582492 71 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 TTC3P1-201ENST00000399586 6081 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 MRPL53P1-201ENST00000414323 319 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 RPS23P9-201ENST00000448848 438 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 RPL15P21-201ENST00000495592 567 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AP001922.4-201ENST00000526967 290 ntBASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 WBP11P1-201ENST00000562560 1931 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 RNU1-77P-201ENST00000390868 162 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 RPS4XP5-201ENST00000419038 768 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC004129.2-201ENST00000457229 287 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC092905.1-201ENST00000467527 949 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 PGAM1P13-201ENST00000507497 754 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 CASC19-264ENST00000641912 1184 ntBASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC88AQ3V6T2 AC087516.1-201ENST00000561236 2428 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AC112255.1-201ENST00000624070 2493 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 RNU1-106P-201ENST00000384382 164 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AL450023.1-201ENST00000450868 751 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AP000547.1-201ENST00000454360 617 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 RPL23AP40-201ENST00000487630 390 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR11J2P-201ENST00000555298 907 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AC018552.1-201ENST00000562099 811 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR1F2P-201ENST00000570470 933 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 MIR4646-201ENST00000580775 63 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 FKBP1AP1-201ENST00000594588 318 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 PPATP2-201ENST00000605635 508 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AL008638.3-201ENST00000623027 5182 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms