Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SAMMSON-209ENST00000641222 1100 ntBASIC9.49□□□□□ -0.89
CUX1P39880 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX1P39880 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX1P39880 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX1P39880 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
CUX1P39880 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX1P39880 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX1P39880 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX1P39880 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX1P39880 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
CUX1P39880 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
CUX1P39880 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC9.48□□□□□ -0.89
CUX1P39880 AC006116.3-201ENST00000592968 361 ntBASIC9.48□□□□□ -0.89
CUX1P39880 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC9.48□□□□□ -0.89
CUX1P39880 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
CUX1P39880 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC9.48□□□□□ -0.89
CUX1P39880 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX1P39880 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 CDC123-202ENST00000378900 933 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX1P39880 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX1P39880 AC007568.1-201ENST00000422912 471 ntBASIC9.47□□□□□ -0.89
CUX1P39880 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX1P39880 RPS23P9-201ENST00000448848 438 ntBASIC9.47□□□□□ -0.89
CUX1P39880 RN7SKP66-201ENST00000516681 231 ntBASIC9.47□□□□□ -0.89
CUX1P39880 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX1P39880 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX1P39880 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX1P39880 PACRG-210ENST00000611387 279 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX1P39880 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 IARS-213ENST00000627121 4587 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX1P39880 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX1P39880 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC9.47□□□□□ -0.89
CUX1P39880 AC079753.1-201ENST00000623243 3868 ntBASIC9.47□□□□□ -0.89
CUX1P39880 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX1P39880 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
CUX1P39880 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
CUX1P39880 FABP12P1-201ENST00000401911 322 ntBASIC9.46□□□□□ -0.89
CUX1P39880 RPL37P18-201ENST00000411602 243 ntBASIC9.46□□□□□ -0.89
CUX1P39880 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
CUX1P39880 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC9.46□□□□□ -0.89
CUX1P39880 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC9.46□□□□□ -0.89
CUX1P39880 AC127381.1-201ENST00000555979 939 ntBASIC9.46□□□□□ -0.89
CUX1P39880 RPL10P14-201ENST00000565265 298 ntBASIC9.46□□□□□ -0.89
CUX1P39880 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC9.46□□□□□ -0.89
CUX1P39880 AC087783.2-201ENST00000605070 562 ntBASIC9.46□□□□□ -0.89
CUX1P39880 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
CUX1P39880 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC9.46□□□□□ -0.89
CUX1P39880 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
CUX1P39880 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC9.46□□□□□ -0.89
CUX1P39880 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.89
CUX1P39880 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
CUX1P39880 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC9.46□□□□□ -0.9
CUX1P39880 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
CUX1P39880 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC9.46□□□□□ -0.9
CUX1P39880 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 U3.36-201ENST00000408418 213 ntBASIC9.46□□□□□ -0.9
CUX1P39880 CBX1P2-201ENST00000453841 458 ntBASIC9.46□□□□□ -0.9
CUX1P39880 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC9.46□□□□□ -0.9
CUX1P39880 RN7SL447P-201ENST00000494711 245 ntBASIC9.46□□□□□ -0.9
CUX1P39880 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC9.46□□□□□ -0.9
CUX1P39880 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC9.46□□□□□ -0.9
CUX1P39880 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 FAM25E-202ENST00000608562 189 ntBASIC9.46□□□□□ -0.9
CUX1P39880 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
CUX1P39880 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CUX1P39880 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 MAPK10-371ENST00000641952 5209 ntBASIC9.45□□□□□ -0.9
CUX1P39880 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC9.45□□□□□ -0.9
CUX1P39880 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 PWAR1-201ENST00000624188 2414 ntBASIC9.45□□□□□ -0.9
CUX1P39880 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 AL353626.3-201ENST00000413399 657 ntBASIC9.45□□□□□ -0.9
CUX1P39880 AL807761.1-201ENST00000417622 171 ntBASIC9.45□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms