Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.6□□□□□ -1.51
COL5A1P20908 MIR6837-201ENST00000620884 64 ntBASIC5.6□□□□□ -1.51
COL5A1P20908 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
COL5A1P20908 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A1P20908 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A1P20908 HSPD1P8-201ENST00000400121 1658 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 AL117378.2-201ENST00000622916 1337 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.59□□□□□ -1.51
COL5A1P20908 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A1P20908 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.59□□□□□ -1.51
COL5A1P20908 MRRFP1-201ENST00000435941 1675 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AL355377.1-201ENST00000621125 1653 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL5A1P20908 RNA5SP30-201ENST00000365552 115 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL5A1P20908 GABARAPL3-201ENST00000412799 354 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AL807761.1-201ENST00000417622 171 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AC005033.1-201ENST00000428904 813 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 AC099521.1-201ENST00000482557 334 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 RN7SL30P-201ENST00000488416 306 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.59□□□□□ -1.51
COL5A1P20908 RN7SL808P-201ENST00000496066 299 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.59□□□□□ -1.51
COL5A1P20908 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.59□□□□□ -1.51
COL5A1P20908 RBM22P12-201ENST00000567098 1255 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.59□□□□□ -1.51
COL5A1P20908 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A1P20908 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A1P20908 AL121768.1-201ENST00000613917 2544 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 MRE11P1-201ENST00000464884 2127 ntBASIC5.59□□□□□ -1.51
COL5A1P20908 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.59□□□□□ -1.52
COL5A1P20908 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL5A1P20908 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.59□□□□□ -1.52
COL5A1P20908 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC5.59□□□□□ -1.52
COL5A1P20908 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL5A1P20908 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 AC010329.1-201ENST00000593903 8328 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 CASC19-243ENST00000641588 1546 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 AL159987.1-201ENST00000347911 293 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 MIR550A3-201ENST00000390735 95 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 RBMY2KP-201ENST00000418221 992 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 AC019185.1-201ENST00000442718 389 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 Z80107.2-201ENST00000445127 392 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 HIGD1AP14-201ENST00000507617 282 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 OR51A1P-201ENST00000511110 946 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.58□□□□□ -1.52
COL5A1P20908 SCARNA6.1-201ENST00000516989 238 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC090424.1-201ENST00000535243 736 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 CR383656.6-201ENST00000550518 394 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.58□□□□□ -1.52
COL5A1P20908 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 THAP12P9-201ENST00000503971 2360 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC005225.5-201ENST00000623547 2225 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A1P20908 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 RN7SKP273-201ENST00000411392 314 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC116036.1-201ENST00000412199 367 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 CYCSP6-201ENST00000434498 302 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 CYCSP12-201ENST00000437729 300 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC006335.2-201ENST00000437993 330 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC023141.8-201ENST00000442554 208 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AC004129.2-201ENST00000457229 287 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 RN7SL570P-201ENST00000484405 292 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 AC253576.1-201ENST00000511645 1156 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 476.8 ms