Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 AC140479.2-201ENST00000421567 3130 ntBASIC5.95□□□□□ -1.46
MSH3P20585 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.95□□□□□ -1.46
MSH3P20585 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 SNORA77.2-201ENST00000408571 112 ntBASIC5.95□□□□□ -1.46
MSH3P20585 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.95□□□□□ -1.46
MSH3P20585 AC110602.1-201ENST00000437414 318 ntBASIC5.95□□□□□ -1.46
MSH3P20585 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.95□□□□□ -1.46
MSH3P20585 RBPJP7-201ENST00000442803 1447 ntBASIC5.95□□□□□ -1.46
MSH3P20585 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.95□□□□□ -1.46
MSH3P20585 AL445466.1-201ENST00000448432 357 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AC005077.1-201ENST00000449226 375 ntBASIC5.95□□□□□ -1.46
MSH3P20585 RBPJP5-201ENST00000449433 1447 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AL162739.1-201ENST00000450606 307 ntBASIC5.95□□□□□ -1.46
MSH3P20585 Z83838.1-202ENST00000456225 839 ntBASIC5.95□□□□□ -1.46
MSH3P20585 ACA64.4-201ENST00000459070 127 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AC104164.1-201ENST00000460282 590 ntBASIC5.95□□□□□ -1.46
MSH3P20585 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.95□□□□□ -1.46
MSH3P20585 RN7SKP70-201ENST00000516655 271 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AC110056.1-201ENST00000525759 911 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.95□□□□□ -1.46
MSH3P20585 AC007956.1-201ENST00000555623 542 ntBASIC5.95□□□□□ -1.46
MSH3P20585 RPA2P1-201ENST00000556557 721 ntBASIC5.95□□□□□ -1.46
MSH3P20585 CYCSP38-201ENST00000559840 322 ntBASIC5.95□□□□□ -1.46
MSH3P20585 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.95□□□□□ -1.46
MSH3P20585 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AL583832.1-201ENST00000603227 784 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 AL136097.3-201ENST00000611097 505 ntBASIC5.95□□□□□ -1.46
MSH3P20585 uc_338.26-201ENST00000612659 160 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AC069542.2-201ENST00000624816 216 ntBASIC5.95□□□□□ -1.46
MSH3P20585 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.95□□□□□ -1.46
MSH3P20585 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 MSL3P1-202ENST00000440028 1468 ntBASIC5.95□□□□□ -1.46
MSH3P20585 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSH3P20585 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 QRSL1P1-201ENST00000400977 1540 ntBASIC5.94□□□□□ -1.46
MSH3P20585 PSG10P-201ENST00000501199 1500 ntBASIC5.94□□□□□ -1.46
MSH3P20585 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 THAP12P9-201ENST00000503971 2360 ntBASIC5.94□□□□□ -1.46
MSH3P20585 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
MSH3P20585 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.94□□□□□ -1.46
MSH3P20585 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 CAP1P2-201ENST00000417455 1409 ntBASIC5.94□□□□□ -1.46
MSH3P20585 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 MIR621-201ENST00000384919 96 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC004386.1-201ENST00000393214 761 ntBASIC5.94□□□□□ -1.46
MSH3P20585 MYL6P5-201ENST00000412707 459 ntBASIC5.94□□□□□ -1.46
MSH3P20585 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 AC117434.1-201ENST00000419971 836 ntBASIC5.94□□□□□ -1.46
MSH3P20585 SETP9-201ENST00000423837 832 ntBASIC5.94□□□□□ -1.46
MSH3P20585 RPL12P16-201ENST00000431098 498 ntBASIC5.94□□□□□ -1.46
MSH3P20585 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.94□□□□□ -1.46
MSH3P20585 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 CFL1P4-201ENST00000451536 498 ntBASIC5.94□□□□□ -1.46
MSH3P20585 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 OR7L1P-201ENST00000456181 380 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 LSM3P4-201ENST00000502948 309 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC093815.1-201ENST00000508637 280 ntBASIC5.94□□□□□ -1.46
MSH3P20585 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.94□□□□□ -1.46
MSH3P20585 IGKV2-19-201ENST00000518132 283 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.94□□□□□ -1.46
MSH3P20585 AP005119.1-201ENST00000580956 292 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.94□□□□□ -1.46
MSH3P20585 AC090236.2-201ENST00000587933 1101 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AC012254.3-201ENST00000591183 2117 ntBASIC5.94□□□□□ -1.46
MSH3P20585 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.94□□□□□ -1.46
MSH3P20585 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms