Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PNKDP1-201ENST00000435914 430 ntBASIC5.54□□□□□ -1.52
SDC1P18827 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 AC005077.1-201ENST00000449226 375 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.54□□□□□ -1.52
SDC1P18827 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.54□□□□□ -1.52
SDC1P18827 RN7SL612P-201ENST00000497704 295 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC018797.1-201ENST00000510791 255 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC021733.2-201ENST00000518830 497 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC009879.1-201ENST00000520029 839 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.54□□□□□ -1.52
SDC1P18827 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.54□□□□□ -1.52
SDC1P18827 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.54□□□□□ -1.52
SDC1P18827 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 AC005244.1-201ENST00000582566 339 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.54□□□□□ -1.52
SDC1P18827 AL136131.3-201ENST00000607600 188 ntBASIC5.54□□□□□ -1.52
SDC1P18827 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.54□□□□□ -1.52
SDC1P18827 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 AL449283.1-201ENST00000602631 3403 ntBASIC5.54□□□□□ -1.52
SDC1P18827 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.53□□□□□ -1.52
SDC1P18827 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SDC1P18827 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SDC1P18827 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.53□□□□□ -1.52
SDC1P18827 AL359885.1-201ENST00000415786 903 ntBASIC5.53□□□□□ -1.52
SDC1P18827 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.53□□□□□ -1.52
SDC1P18827 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 VN1R21P-201ENST00000426703 765 ntBASIC5.53□□□□□ -1.52
SDC1P18827 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.53□□□□□ -1.52
SDC1P18827 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.53□□□□□ -1.52
SDC1P18827 OR8Q1P-201ENST00000526467 655 ntBASIC5.53□□□□□ -1.52
SDC1P18827 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.53□□□□□ -1.52
SDC1P18827 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.53□□□□□ -1.52
SDC1P18827 DPPA3P2-202ENST00000557188 1219 ntBASIC5.53□□□□□ -1.52
SDC1P18827 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.53□□□□□ -1.52
SDC1P18827 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.53□□□□□ -1.52
SDC1P18827 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.53□□□□□ -1.52
SDC1P18827 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 AL161912.3-201ENST00000605404 628 ntBASIC5.53□□□□□ -1.52
SDC1P18827 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.53□□□□□ -1.52
SDC1P18827 AC092266.1-201ENST00000610958 165 ntBASIC5.53□□□□□ -1.52
SDC1P18827 AC015712.7-201ENST00000615211 635 ntBASIC5.53□□□□□ -1.52
SDC1P18827 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 AC083837.1-201ENST00000565297 2994 ntBASIC5.53□□□□□ -1.52
SDC1P18827 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 WDR95P-201ENST00000425638 1542 ntBASIC5.53□□□□□ -1.52
SDC1P18827 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
SDC1P18827 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SDC1P18827 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SDC1P18827 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 DEFA9P-201ENST00000433042 285 ntBASIC5.52□□□□□ -1.53
SDC1P18827 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 AC099670.2-201ENST00000435130 321 ntBASIC5.52□□□□□ -1.53
SDC1P18827 RPL6P30-201ENST00000443382 862 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC093166.4-201ENST00000457867 318 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC098847.1-201ENST00000473094 348 ntBASIC5.52□□□□□ -1.53
SDC1P18827 OR7E157P-201ENST00000494376 911 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 AC021146.10-201ENST00000515628 706 ntBASIC5.52□□□□□ -1.53
SDC1P18827 RN7SKP238-201ENST00000516483 249 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.52□□□□□ -1.53
SDC1P18827 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 RPA2P1-201ENST00000556557 721 ntBASIC5.52□□□□□ -1.53
SDC1P18827 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AC138207.8-204ENST00000579588 527 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms