Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RN7SL544P-201ENST00000617232 284 ntBASIC5.42□□□□□ -1.54
SPTA1P02549 RN7SL763P-201ENST00000620922 284 ntBASIC5.42□□□□□ -1.54
SPTA1P02549 AL450226.2-201ENST00000622913 439 ntBASIC5.42□□□□□ -1.54
SPTA1P02549 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 AC127024.8-201ENST00000623719 2094 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 DYNC1I2P1-201ENST00000435916 1838 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 AC009120.2-204ENST00000621548 2032 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 MAPK10-261ENST00000641050 3109 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 APP-206ENST00000359726 3294 ntTSL 2 BASIC5.41□□□□□ -1.54
SPTA1P02549 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
SPTA1P02549 AC024651.2-201ENST00000562480 2098 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 Y_RNA.126-201ENST00000363382 111 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 NRBF2P2-201ENST00000413087 861 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.41□□□□□ -1.54
SPTA1P02549 RN7SL30P-201ENST00000488416 306 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 RBM22P12-201ENST00000567098 1255 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 AC073869.10-201ENST00000642016 354 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.41□□□□□ -1.54
SPTA1P02549 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.41□□□□□ -1.54
SPTA1P02549 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.41□□□□□ -1.54
SPTA1P02549 AC131971.1-201ENST00000332881 1482 ntBASIC5.41□□□□□ -1.54
SPTA1P02549 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SPTA1P02549 AC020978.8-201ENST00000571975 3022 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 AC005042.1-201ENST00000393397 800 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 MIR1204-201ENST00000408388 67 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.4□□□□□ -1.54
SPTA1P02549 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.4□□□□□ -1.54
SPTA1P02549 PRPF38AP2-201ENST00000438179 851 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 AL157777.1-201ENST00000468100 304 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.4□□□□□ -1.54
SPTA1P02549 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.4□□□□□ -1.54
SPTA1P02549 AC022832.1-201ENST00000530718 645 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.4□□□□□ -1.54
SPTA1P02549 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.4□□□□□ -1.54
SPTA1P02549 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.4□□□□□ -1.54
SPTA1P02549 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SPTA1P02549 AL137067.2-201ENST00000621202 131 ntBASIC5.4□□□□□ -1.54
SPTA1P02549 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SPTA1P02549 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SPTA1P02549 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SPTA1P02549 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SPTA1P02549 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
SPTA1P02549 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SPTA1P02549 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SPTA1P02549 MIR199B-201ENST00000384849 110 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 AL096829.1-201ENST00000413677 457 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 NMD3P2-201ENST00000421815 761 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.4□□□□□ -1.55
SPTA1P02549 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.4□□□□□ -1.55
SPTA1P02549 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.4□□□□□ -1.55
SPTA1P02549 AC034236.1-201ENST00000469891 373 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.4□□□□□ -1.55
SPTA1P02549 BNIP3P5-201ENST00000562290 498 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.4□□□□□ -1.55
SPTA1P02549 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.4□□□□□ -1.55
SPTA1P02549 AC008115.3-201ENST00000614874 549 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 AC016717.3-201ENST00000624730 554 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.4□□□□□ -1.55
SPTA1P02549 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SPTA1P02549 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SPTA1P02549 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SPTA1P02549 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SPTA1P02549 SALL4P7-201ENST00000555779 3120 ntBASIC5.4□□□□□ -1.55
SPTA1P02549 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SPTA1P02549 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC5.4□□□□□ -1.55
SPTA1P02549 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SPTA1P02549 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.39□□□□□ -1.55
SPTA1P02549 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.39□□□□□ -1.55
SPTA1P02549 AL022331.1-201ENST00000429025 477 ntBASIC5.39□□□□□ -1.55
SPTA1P02549 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.39□□□□□ -1.55
SPTA1P02549 AC239367.2-201ENST00000447309 705 ntBASIC5.39□□□□□ -1.55
SPTA1P02549 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.39□□□□□ -1.55
SPTA1P02549 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.39□□□□□ -1.55
SPTA1P02549 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SPTA1P02549 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.39□□□□□ -1.55
SPTA1P02549 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.39□□□□□ -1.55
SPTA1P02549 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms