Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC078878.1-201ENST00000539832 958 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MIR4311-201ENST00000580794 100 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 BNIP3P22-201ENST00000593399 556 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 MAP1A-202ENST00000382031 10553 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC105235.1-201ENST00000623208 1816 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 CCDC11P1-201ENST00000503137 1162 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 GTF2IP11-201ENST00000526931 420 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 NUP210L-203ENST00000368559 5889 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 NEK1-207ENST00000511633 5536 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AC005618.1-201ENST00000606901 3148 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 RN7SKP227-201ENST00000364445 330 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 HIRAP1-201ENST00000605318 787 ntBASIC5.5□□□□□ -1.53
VPS13AQ96RL7 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS13AQ96RL7 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 RN7SKP6-201ENST00000364795 319 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 RPL23AP72-201ENST00000492447 435 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 GCSHP4-201ENST00000538792 439 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 PARP1P2-201ENST00000556806 195 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 MYO5A-213ENST00000613858 12139 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 CNOT7P1-201ENST00000429006 852 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms