Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC114876.1-201ENST00000490962 1366 ntBASIC5.96□□□□□ -1.45
VPS35Q96QK1 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC004386.1-201ENST00000393214 761 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 AL096711.1-201ENST00000404780 554 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AL731534.1-201ENST00000434711 269 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 AL162739.1-201ENST00000450606 307 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 CCDC11P1-201ENST00000503137 1162 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 RN7SKP238-201ENST00000516483 249 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 RNA5SP340-201ENST00000517132 107 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC005363.1-201ENST00000530779 351 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC079905.1-201ENST00000549280 475 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 MIR6809-201ENST00000612189 116 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 AL136228.1-201ENST00000622221 319 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC132825.8-201ENST00000640783 297 ntBASIC5.96□□□□□ -1.46
VPS35Q96QK1 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS35Q96QK1 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS35Q96QK1 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 PSG10P-201ENST00000501199 1500 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AL121835.1-201ENST00000404250 354 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC013410.1-201ENST00000436223 1232 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC110602.1-201ENST00000437414 318 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 BX679664.2-201ENST00000439282 283 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 GEMIN2P1-201ENST00000454246 752 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC104164.1-201ENST00000460282 590 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 RN7SL269P-201ENST00000467795 305 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AL355032.1-201ENST00000472981 438 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC025458.1-201ENST00000506046 166 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC027369.2-201ENST00000528030 440 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AC108673.3-201ENST00000609183 335 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 AL355834.1-201ENST00000556602 3965 ntBASIC5.95□□□□□ -1.46
VPS35Q96QK1 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS35Q96QK1 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS35Q96QK1 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
VPS35Q96QK1 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
VPS35Q96QK1 AL121768.1-201ENST00000613917 2544 ntBASIC5.94□□□□□ -1.46
VPS35Q96QK1 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS35Q96QK1 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS35Q96QK1 THAP12P9-201ENST00000503971 2360 ntBASIC5.94□□□□□ -1.46
VPS35Q96QK1 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS35Q96QK1 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms