Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 DOCK11P1-201ENST00000553480 5932 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AC007568.1-201ENST00000422912 471 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 PSMD10P3-201ENST00000437000 448 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AC015983.1-201ENST00000441577 373 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AL162739.1-201ENST00000450606 307 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 ELOCP28-201ENST00000590044 317 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AP001885.1-201ENST00000621658 558 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 AC023421.1-201ENST00000590535 1785 ntBASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC88AQ3V6T2 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 RBMY2QP-201ENST00000429799 1147 ntBASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 PA2G4P6-201ENST00000438325 1197 ntBASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 RPL7L1P3-201ENST00000455249 689 ntBASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 CYP4F27P-201ENST00000514557 494 ntBASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 HMGB1P42-201ENST00000532126 553 ntBASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC88AQ3V6T2 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 GAPDHP24-201ENST00000328713 983 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 OR10R3P-201ENST00000361688 942 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 RNA5SP251-201ENST00000410614 137 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 RPS6P23-201ENST00000413224 722 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC091390.1-201ENST00000433904 331 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 VN1R54P-201ENST00000435210 1049 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AL035090.1-201ENST00000454835 332 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC073610.1-201ENST00000489971 396 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 RN7SKP66-201ENST00000516681 231 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 SUGT1P3-202ENST00000604259 383 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AL731566.2-201ENST00000618971 317 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC091953.3-201ENST00000623220 236 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 AC079777.1-201ENST00000623836 1953 ntBASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC88AQ3V6T2 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC88AQ3V6T2 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms