Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC011497.2-201ENST00000600255 639 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC073333.2-201ENST00000603589 769 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC116651.1-201ENST00000609724 556 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC073592.7-201ENST00000623659 507 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC073488.9-201ENST00000631601 754 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 SNORA70-201ENST00000384436 135 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 MIR7-1-201ENST00000384871 110 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RNA5SP251-201ENST00000410614 137 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AL713922.1-201ENST00000416477 747 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC007064.3-201ENST00000422608 359 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 KIF4CP-201ENST00000422742 1279 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RPL34P27-201ENST00000428810 349 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 MTCO1P57-201ENST00000432182 261 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 IGLV3-4-201ENST00000432300 244 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 NDUFA5P1-201ENST00000433858 341 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 MAPRE1P3-201ENST00000435438 796 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AL353662.1-201ENST00000439099 327 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RPL31P53-201ENST00000457065 348 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RPL19P11-201ENST00000495944 589 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC231760.1-201ENST00000498002 260 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 RNA5SP438-201ENST00000516561 112 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 NPM1P52-201ENST00000518264 846 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 PVT1-214ENST00000522875 922 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AP003396.4-201ENST00000527574 265 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC079600.1-201ENST00000550326 297 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AL049840.5-201ENST00000602827 552 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 AC006924.1-201ENST00000610750 559 ntBASIC6.06□□□□□ -1.44
COL28A1Q2UY09 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL28A1Q2UY09 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC013488.1-201ENST00000526618 1838 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 DPPA2P3-201ENST00000411853 655 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC096644.3-201ENST00000416788 338 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms