Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 ZNF334-201ENST00000347606 3890 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 AC245505.2-201ENST00000553572 3055 ntBASIC7.31□□□□□ -1.24
MSX1P28360 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 GJB7-203ENST00000525899 2281 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC7.31□□□□□ -1.24
MSX1P28360 CCDC191-201ENST00000295878 3976 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 AC018880.1-201ENST00000418898 1319 ntBASIC7.31□□□□□ -1.24
MSX1P28360 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 AL354719.2-201ENST00000429530 1454 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
MSX1P28360 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 AC012078.1-201ENST00000405035 1646 ntBASIC7.31□□□□□ -1.24
MSX1P28360 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 CCR3-208ENST00000545097 1786 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 MSANTD3-206ENST00000613183 1755 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 HPS4-201ENST00000336873 3786 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 EFCAB1-201ENST00000262103 2051 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC7.31□□□□□ -1.24
MSX1P28360 ANGPT2-203ENST00000523120 2997 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 CD86-201ENST00000264468 2634 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 GSTM2-204ENST00000369831 1730 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 GSTA9P-201ENST00000406231 611 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 AL022334.1-201ENST00000417397 1726 ntBASIC7.31□□□□□ -1.24
MSX1P28360 CSE1L-AS1-201ENST00000417781 556 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 USP9YP27-201ENST00000418455 438 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 ZNF887P-201ENST00000431363 1407 ntBASIC7.31□□□□□ -1.24
MSX1P28360 MYO1A-203ENST00000442789 3658 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 YAP1P2-201ENST00000455104 610 ntBASIC7.31□□□□□ -1.24
MSX1P28360 OFD1P4Y-201ENST00000455273 1179 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AHI1-208ENST00000488690 712 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 RPSAP52-201ENST00000489520 1144 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 AC111000.3-201ENST00000508057 576 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC7.31□□□□□ -1.24
MSX1P28360 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC7.31□□□□□ -1.24
MSX1P28360 RGS5-219ENST00000528019 512 ntTSL 4 BASIC7.31□□□□□ -1.24
MSX1P28360 SERPINA15P-201ENST00000529287 266 ntBASIC7.31□□□□□ -1.24
MSX1P28360 CBX3P5-201ENST00000552017 521 ntBASIC7.31□□□□□ -1.24
MSX1P28360 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC7.31□□□□□ -1.24
MSX1P28360 TEX46-202ENST00000566855 510 ntAPPRIS P2 TSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 AP001004.1-201ENST00000582468 324 ntBASIC7.31□□□□□ -1.24
MSX1P28360 MIR5010-201ENST00000582846 120 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AC011933.4-201ENST00000585081 403 ntTSL 3 BASIC7.31□□□□□ -1.24
MSX1P28360 AC005262.1-201ENST00000588562 362 ntBASIC7.31□□□□□ -1.24
MSX1P28360 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 AC010719.1-201ENST00000602992 747 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AC073091.2-201ENST00000603205 907 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AL139286.1-201ENST00000604465 483 ntBASIC7.31□□□□□ -1.24
MSX1P28360 RN7SL840P-201ENST00000606883 284 ntBASIC7.31□□□□□ -1.24
MSX1P28360 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC7.31□□□□□ -1.24
MSX1P28360 AC027807.2-201ENST00000616099 408 ntBASIC7.31□□□□□ -1.24
MSX1P28360 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 AL160413.1-201ENST00000622780 310 ntBASIC7.31□□□□□ -1.24
MSX1P28360 ZNF334-206ENST00000625284 2495 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 KLF8-206ENST00000640927 1150 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 PIGN-231ENST00000639174 4095 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 AL080317.3-201ENST00000607434 4315 ntBASIC7.31□□□□□ -1.24
MSX1P28360 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 DGKG-202ENST00000344484 3445 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
MSX1P28360 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.31□□□□□ -1.24
MSX1P28360 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 EIF4BP4-201ENST00000441847 1780 ntBASIC7.31□□□□□ -1.24
MSX1P28360 ERI2-215ENST00000569729 2646 ntTSL 2 BASIC7.31□□□□□ -1.24
MSX1P28360 AC016251.1-201ENST00000624299 4198 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 SSXP3-201ENST00000442971 1300 ntBASIC7.3□□□□□ -1.24
MSX1P28360 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 KIF4B-201ENST00000435029 4378 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSX1P28360 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSX1P28360 C1orf158-203ENST00000614859 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 ZNF174-203ENST00000571936 1586 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 FRG1BP-201ENST00000278882 761 ntBASIC7.3□□□□□ -1.24
MSX1P28360 ENSAP3-201ENST00000312710 333 ntBASIC7.3□□□□□ -1.24
MSX1P28360 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSX1P28360 FRG1CP-201ENST00000358464 769 ntBASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms