Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHOX2O60902 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
SHOX2O60902 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHOX2O60902 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.87□□□□□ -1.47
SHOX2O60902 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.87□□□□□ -1.47
SHOX2O60902 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHOX2O60902 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.87□□□□□ -1.47
SHOX2O60902 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SHOX2O60902 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
SHOX2O60902 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.86□□□□□ -1.47
SHOX2O60902 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 OR9K1P-201ENST00000326513 941 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 NPM1P40-201ENST00000412758 733 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 VN1R21P-201ENST00000426703 765 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 GTF2IP14-201ENST00000441415 586 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 E2F6P3-201ENST00000441743 743 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 OR7E22P-201ENST00000478335 1035 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC021193.1-201ENST00000511607 420 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 IGLV3-24-201ENST00000517477 197 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC024405.1-201ENST00000532521 1042 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 MRPS21P8-201ENST00000569196 235 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC5.86□□□□□ -1.47
SHOX2O60902 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC5.86□□□□□ -1.47
SHOX2O60902 MIR6798-201ENST00000612887 67 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 BNIP3P41-202ENST00000616656 861 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 AC117503.3-201ENST00000623811 601 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.86□□□□□ -1.47
SHOX2O60902 PCAT14-202ENST00000627127 3935 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHOX2O60902 AC104260.2-201ENST00000623551 3497 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
SHOX2O60902 AL591135.1-201ENST00000401578 5914 ntBASIC5.86□□□□□ -1.47
SHOX2O60902 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SHOX2O60902 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.85□□□□□ -1.47
SHOX2O60902 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.85□□□□□ -1.47
SHOX2O60902 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 OR10R3P-201ENST00000361688 942 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC096921.1-201ENST00000411661 375 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AL672212.1-201ENST00000422246 400 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 NPM1P25-201ENST00000429734 854 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 AL157385.1-201ENST00000446973 268 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.85□□□□□ -1.47
SHOX2O60902 TREML3P-201ENST00000457327 501 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 AC093870.1-201ENST00000506837 213 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 OR4D12P-201ENST00000509361 911 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC138517.1-201ENST00000515724 568 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.85□□□□□ -1.47
SHOX2O60902 AP002004.1-206ENST00000532441 876 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC016839.1-201ENST00000578162 867 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 MIR4472-2-201ENST00000582069 67 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AL356608.1-201ENST00000610034 820 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 MIR6070-201ENST00000613967 103 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AL445670.1-201ENST00000618889 801 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AL035661.1-201ENST00000620459 1144 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms