Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.72□□□□□ -1.49
SNX3O60493 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.72□□□□□ -1.49
SNX3O60493 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.72□□□□□ -1.49
SNX3O60493 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SNX3O60493 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
SNX3O60493 EIF3EP1-201ENST00000433978 1316 ntBASIC5.72□□□□□ -1.49
SNX3O60493 RNF19BPY-201ENST00000458209 1550 ntBASIC5.72□□□□□ -1.49
SNX3O60493 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.72□□□□□ -1.49
SNX3O60493 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.72□□□□□ -1.49
SNX3O60493 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SNX3O60493 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
SNX3O60493 AP004607.3-201ENST00000530354 3915 ntBASIC5.71□□□□□ -1.49
SNX3O60493 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
SNX3O60493 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SNX3O60493 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
SNX3O60493 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SNX3O60493 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SNX3O60493 AC010894.1-201ENST00000313760 361 ntBASIC5.71□□□□□ -1.5
SNX3O60493 OR7E25P-201ENST00000344844 931 ntBASIC5.71□□□□□ -1.5
SNX3O60493 RNU1-5P-201ENST00000362684 144 ntBASIC5.71□□□□□ -1.5
SNX3O60493 Y_RNA.209-201ENST00000364156 111 ntBASIC5.71□□□□□ -1.5
SNX3O60493 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC5.71□□□□□ -1.5
SNX3O60493 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.71□□□□□ -1.5
SNX3O60493 AC244453.4-201ENST00000419150 388 ntBASIC5.71□□□□□ -1.5
SNX3O60493 PTPN2P1-201ENST00000423212 1072 ntBASIC5.71□□□□□ -1.5
SNX3O60493 HMGB1P32-201ENST00000425971 565 ntBASIC5.71□□□□□ -1.5
SNX3O60493 OR52S1P-201ENST00000427016 937 ntBASIC5.71□□□□□ -1.5
SNX3O60493 POU5F1P5-201ENST00000445059 658 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AC010240.2-201ENST00000445363 1205 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.71□□□□□ -1.5
SNX3O60493 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.71□□□□□ -1.5
SNX3O60493 RPL5P15-201ENST00000475870 897 ntBASIC5.71□□□□□ -1.5
SNX3O60493 OR7E22P-201ENST00000478335 1035 ntBASIC5.71□□□□□ -1.5
SNX3O60493 TRBV8-1-201ENST00000481590 279 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AF305872.1-201ENST00000485217 471 ntBASIC5.71□□□□□ -1.5
SNX3O60493 ENPP7P11-201ENST00000505915 627 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AC105384.2-201ENST00000508433 640 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.71□□□□□ -1.5
SNX3O60493 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SNX3O60493 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 AC023080.1-201ENST00000551663 931 ntBASIC5.71□□□□□ -1.5
SNX3O60493 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 MIR4685-201ENST00000578185 69 ntBASIC5.71□□□□□ -1.5
SNX3O60493 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 AL713998.2-201ENST00000604538 1198 ntBASIC5.71□□□□□ -1.5
SNX3O60493 OR51C1P-201ENST00000608504 942 ntBASIC5.71□□□□□ -1.5
SNX3O60493 TPT1-AS1-221ENST00000618947 520 ntTSL 3 BASIC5.71□□□□□ -1.5
SNX3O60493 AC026367.3-201ENST00000619032 590 ntBASIC5.71□□□□□ -1.5
SNX3O60493 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC5.71□□□□□ -1.5
SNX3O60493 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SNX3O60493 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SNX3O60493 ADAM5-202ENST00000399789 1942 ntBASIC5.71□□□□□ -1.5
SNX3O60493 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SNX3O60493 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC5.71□□□□□ -1.5
SNX3O60493 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SNX3O60493 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 AC125336.1-201ENST00000508893 2827 ntBASIC5.7□□□□□ -1.5
SNX3O60493 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 BX284613.1-201ENST00000452221 1641 ntBASIC5.7□□□□□ -1.5
SNX3O60493 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SNX3O60493 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SNX3O60493 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC5.7□□□□□ -1.5
SNX3O60493 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.7□□□□□ -1.5
SNX3O60493 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 AC015983.1-201ENST00000441577 373 ntBASIC5.7□□□□□ -1.5
SNX3O60493 TCEA1P3-201ENST00000443005 880 ntBASIC5.7□□□□□ -1.5
SNX3O60493 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 RPS7P3-201ENST00000443360 580 ntBASIC5.7□□□□□ -1.5
SNX3O60493 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC5.7□□□□□ -1.5
SNX3O60493 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 TAAR4P-201ENST00000454843 1039 ntBASIC5.7□□□□□ -1.5
SNX3O60493 RNU1-88P-201ENST00000459274 128 ntBASIC5.7□□□□□ -1.5
SNX3O60493 RPS7P6-201ENST00000485777 579 ntBASIC5.7□□□□□ -1.5
SNX3O60493 AC083795.1-201ENST00000491760 320 ntBASIC5.7□□□□□ -1.5
SNX3O60493 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.7□□□□□ -1.5
SNX3O60493 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.7□□□□□ -1.5
SNX3O60493 AC106730.2-201ENST00000566641 540 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms