Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL451049.1-201ENST00000608672 497 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC004948.1-201ENST00000609858 672 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC005277.2-201ENST00000617898 390 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC018692.2-201ENST00000624130 348 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC103703.1-201ENST00000634783 663 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC027559.1-201ENST00000636288 271 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC015689.2-201ENST00000528172 1738 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 THAP12P8-201ENST00000447914 2115 ntBASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
PDLIM3Q53GG5 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC005261.6-201ENST00000623072 1387 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC073365.1-203ENST00000641055 1992 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AL031985.1-201ENST00000392713 418 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 RN7SKP129-201ENST00000410288 299 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 HMGN1P20-201ENST00000411849 300 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC116036.1-201ENST00000412199 367 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC019070.1-201ENST00000415008 1024 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC007064.3-201ENST00000422608 359 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 GPN3P1-201ENST00000423883 535 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC106901.1-201ENST00000425086 698 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC099782.1-201ENST00000425889 474 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 ARMC4P1-201ENST00000438905 707 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AMYP1-201ENST00000440059 1023 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 ARAFP2-201ENST00000440565 559 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC017099.1-201ENST00000448261 1028 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AKR1D1P1-201ENST00000457236 936 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC093827.1-201ENST00000480094 861 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 OR52H2P-201ENST00000514607 902 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 RN7SKP196-201ENST00000516267 345 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC024589.2-201ENST00000605642 1294 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC108865.2-201ENST00000606881 432 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC069234.4-201ENST00000621276 412 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 AC005225.5-201ENST00000623547 2225 ntBASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PDLIM3Q53GG5 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
PDLIM3Q53GG5 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms