Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 RNU6-413P-201ENST00000384115 107 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 RPS3AP26-201ENST00000398259 784 ntBASIC7.34□□□□□ -1.23
LIG3P49916 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
LIG3P49916 RN7SKP232-201ENST00000410170 290 ntBASIC7.34□□□□□ -1.23
LIG3P49916 RN7SKP117-201ENST00000410175 264 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC017035.1-201ENST00000411999 1115 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AL356968.2-201ENST00000412769 1257 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC023128.2-201ENST00000420880 1223 ntBASIC7.34□□□□□ -1.23
LIG3P49916 FDPSP1-201ENST00000424976 1071 ntBASIC7.34□□□□□ -1.23
LIG3P49916 CYP4F34P-201ENST00000425951 481 ntBASIC7.34□□□□□ -1.23
LIG3P49916 RAC1P8-201ENST00000427086 527 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC097721.1-201ENST00000427150 1253 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 DSTNP5-201ENST00000427921 523 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC010153.1-201ENST00000432862 727 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC098826.1-201ENST00000433943 471 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC7.34□□□□□ -1.23
LIG3P49916 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 AC233982.1-201ENST00000451247 436 ntBASIC7.34□□□□□ -1.23
LIG3P49916 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 TUBBP11-201ENST00000472255 252 ntBASIC7.34□□□□□ -1.23
LIG3P49916 ANK3-213ENST00000486349 493 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 AC025459.1-201ENST00000504072 156 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC7.34□□□□□ -1.23
LIG3P49916 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC7.34□□□□□ -1.23
LIG3P49916 PTK2-220ENST00000520151 573 ntTSL 4 BASIC7.34□□□□□ -1.23
LIG3P49916 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 OR5M4P-201ENST00000529436 925 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 OR5F2P-201ENST00000532761 941 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 AL391156.1-201ENST00000554965 554 ntBASIC7.34□□□□□ -1.23
LIG3P49916 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 AC087465.1-201ENST00000560574 245 ntBASIC7.34□□□□□ -1.23
LIG3P49916 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 PPIAP14-201ENST00000577627 496 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC010463.3-201ENST00000594077 500 ntBASIC7.34□□□□□ -1.23
LIG3P49916 IGKV1OR2-9-201ENST00000603957 287 ntBASIC7.34□□□□□ -1.23
LIG3P49916 IGKV1OR2-11-201ENST00000604120 287 ntBASIC7.34□□□□□ -1.23
LIG3P49916 NDUFB9P1-201ENST00000604683 510 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC087752.4-201ENST00000605911 462 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC245297.2-201ENST00000610119 565 ntBASIC7.34□□□□□ -1.23
LIG3P49916 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIG3P49916 AL157770.1-201ENST00000623049 439 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC092159.4-201ENST00000624944 550 ntBASIC7.34□□□□□ -1.23
LIG3P49916 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC7.34□□□□□ -1.23
LIG3P49916 AL590396.3-201ENST00000636334 300 ntBASIC7.34□□□□□ -1.23
LIG3P49916 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.34□□□□□ -1.23
LIG3P49916 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIG3P49916 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
LIG3P49916 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.34□□□□□ -1.24
LIG3P49916 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.24
LIG3P49916 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
LIG3P49916 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.33□□□□□ -1.24
LIG3P49916 AC104446.1-201ENST00000613728 1321 ntBASIC7.33□□□□□ -1.24
LIG3P49916 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC7.33□□□□□ -1.24
LIG3P49916 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 RNU6-304P-201ENST00000364855 107 ntBASIC7.33□□□□□ -1.24
LIG3P49916 SNORD116.1-201ENST00000365628 92 ntBASIC7.33□□□□□ -1.24
LIG3P49916 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 SNORD65C-201ENST00000390962 71 ntBASIC7.33□□□□□ -1.24
LIG3P49916 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 RPL7P53-201ENST00000421245 739 ntBASIC7.33□□□□□ -1.24
LIG3P49916 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 AL138479.1-201ENST00000426913 484 ntBASIC7.33□□□□□ -1.24
LIG3P49916 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 AL035458.1-201ENST00000433096 585 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AL353706.1-201ENST00000436728 494 ntBASIC7.33□□□□□ -1.24
LIG3P49916 COX7BP2-201ENST00000437976 242 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC079781.1-201ENST00000441505 394 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC023512.1-201ENST00000444513 499 ntBASIC7.33□□□□□ -1.24
LIG3P49916 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 MTND2P19-201ENST00000449129 1012 ntBASIC7.33□□□□□ -1.24
LIG3P49916 CCNJP1-201ENST00000450600 1149 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AURKAPS1-201ENST00000451805 1212 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC019080.2-201ENST00000453859 394 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms