Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC020916.2-201ENST00000591242 360 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 AL591167.1-201ENST00000607321 456 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.97□□□□□ -1.45
HNF4AP41235 U1.25-201ENST00000614085 162 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 U1.31-201ENST00000620022 160 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 AL137067.2-201ENST00000621202 131 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 OR7A1P-202ENST00000641542 1158 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
HNF4AP41235 MTCO1P15-201ENST00000529569 1526 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
HNF4AP41235 DNM1P47-203ENST00000571780 12667 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HNF4AP41235 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HNF4AP41235 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HNF4AP41235 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HNF4AP41235 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.97□□□□□ -1.45
HNF4AP41235 AC107021.2-201ENST00000567714 2095 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.97□□□□□ -1.45
HNF4AP41235 EIF3EP1-201ENST00000433978 1316 ntBASIC5.97□□□□□ -1.45
HNF4AP41235 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.96□□□□□ -1.45
HNF4AP41235 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.96□□□□□ -1.45
HNF4AP41235 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 RN7SKP171-201ENST00000364417 303 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-1320P-201ENST00000390838 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-1269P-201ENST00000391139 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AL121835.1-201ENST00000404250 354 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AL139805.1-201ENST00000407837 289 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.96□□□□□ -1.46
HNF4AP41235 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.96□□□□□ -1.46
HNF4AP41235 PSMD10P2-201ENST00000432890 672 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AC009963.4-201ENST00000448535 339 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RPL23AP60-201ENST00000450011 454 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 HIGD1AP16-201ENST00000450986 258 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-599P-201ENST00000459383 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-1193P-201ENST00000459461 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.96□□□□□ -1.46
HNF4AP41235 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.96□□□□□ -1.46
HNF4AP41235 AC112484.3-201ENST00000505910 329 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AC093815.1-201ENST00000508637 280 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.96□□□□□ -1.46
HNF4AP41235 SNX18P25-201ENST00000510539 758 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 ZNF519P4-201ENST00000514008 125 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.96□□□□□ -1.46
HNF4AP41235 AC110056.1-201ENST00000525759 911 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.96□□□□□ -1.46
HNF4AP41235 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 OR7M1P-201ENST00000608946 533 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 AL135999.3-201ENST00000610501 812 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-368P-201ENST00000620928 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 RNU6-538P-201ENST00000622329 107 ntBASIC5.96□□□□□ -1.46
HNF4AP41235 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.96□□□□□ -1.46
HNF4AP41235 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
HNF4AP41235 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.96□□□□□ -1.46
HNF4AP41235 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HNF4AP41235 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HNF4AP41235 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.95□□□□□ -1.46
HNF4AP41235 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.95□□□□□ -1.46
HNF4AP41235 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 AC090181.3-201ENST00000624777 1514 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.95□□□□□ -1.46
HNF4AP41235 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 OR7E25P-201ENST00000344844 931 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 RNA5SP232-201ENST00000364144 119 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 RNU6-1263P-201ENST00000384601 106 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 RNU11-201ENST00000387069 134 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 RN7SKP144-201ENST00000411108 279 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 AC015977.1-201ENST00000418887 292 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HNF4AP41235 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.95□□□□□ -1.46
HNF4AP41235 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.95□□□□□ -1.46
HNF4AP41235 IGLV3-4-201ENST00000432300 244 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 EEF1B2P3-201ENST00000447718 678 ntBASIC5.95□□□□□ -1.46
HNF4AP41235 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.95□□□□□ -1.46
HNF4AP41235 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.95□□□□□ -1.46
HNF4AP41235 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms