Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 RNA5SP375-201ENST00000362975 119 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC240504.1-201ENST00000395709 845 ntBASIC5.63□□□□□ -1.51
SOX3P41225 SNORA11.3-201ENST00000408471 128 ntBASIC5.63□□□□□ -1.51
SOX3P41225 MTATP6P19-201ENST00000413797 659 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.63□□□□□ -1.51
SOX3P41225 EIF5AP4-201ENST00000441206 465 ntBASIC5.63□□□□□ -1.51
SOX3P41225 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.63□□□□□ -1.51
SOX3P41225 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.63□□□□□ -1.51
SOX3P41225 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 AC008429.4-201ENST00000521201 182 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX3P41225 AC067773.1-201ENST00000603284 1094 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC141002.1-201ENST00000607025 279 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC107308.1-201ENST00000615897 301 ntBASIC5.63□□□□□ -1.51
SOX3P41225 MIR6861-201ENST00000618657 64 ntBASIC5.63□□□□□ -1.51
SOX3P41225 SNORA11.6-201ENST00000619030 128 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC003992.1-201ENST00000635364 557 ntBASIC5.63□□□□□ -1.51
SOX3P41225 AC000095.2-202ENST00000637415 154 ntBASIC5.63□□□□□ -1.51
SOX3P41225 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 CCNT2P1-201ENST00000423082 1315 ntBASIC5.63□□□□□ -1.51
SOX3P41225 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 AP000432.2-201ENST00000624164 2048 ntBASIC5.63□□□□□ -1.51
SOX3P41225 BRAFP1-201ENST00000445336 2703 ntBASIC5.63□□□□□ -1.51
SOX3P41225 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 AL359091.1-201ENST00000449048 1734 ntBASIC5.62□□□□□ -1.51
SOX3P41225 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 AC119674.1-202ENST00000641333 1860 ntBASIC5.62□□□□□ -1.51
SOX3P41225 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 RNU11-201ENST00000387069 134 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AL121977.1-201ENST00000401636 979 ntBASIC5.62□□□□□ -1.51
SOX3P41225 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AC245096.1-201ENST00000413104 546 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AL096829.1-201ENST00000413677 457 ntBASIC5.62□□□□□ -1.51
SOX3P41225 VN1R3-201ENST00000418822 919 ntBASIC5.62□□□□□ -1.51
SOX3P41225 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 RPL12P16-201ENST00000431098 498 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AL365220.1-201ENST00000432923 399 ntBASIC5.62□□□□□ -1.51
SOX3P41225 UBE2V2P3-201ENST00000433562 437 ntBASIC5.62□□□□□ -1.51
SOX3P41225 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX3P41225 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX3P41225 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX3P41225 AC112187.1-201ENST00000455837 479 ntBASIC5.62□□□□□ -1.51
SOX3P41225 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX3P41225 PPP1R11P1-201ENST00000486095 376 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AP000926.3-201ENST00000497201 299 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AC093815.1-201ENST00000508637 280 ntBASIC5.62□□□□□ -1.51
SOX3P41225 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 RNU6-964P-201ENST00000516524 69 ntBASIC5.62□□□□□ -1.51
SOX3P41225 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX3P41225 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX3P41225 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX3P41225 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms