Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CHMP1AQ9HD42 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 UBE2DNL-204ENST00000602536 740 ntBASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHMP1AQ9HD42 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHMP1AQ9HD42 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
CHMP1AQ9HD42 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CHMP1AQ9HD42 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms