Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 AC124016.1-201ENST00000609552 612 ntBASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 GABARAPL3-202ENST00000624044 1851 ntBASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFWD3Q6PCD5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 KRASP1-201ENST00000407852 552 ntBASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.54■□□□□ 0.88
RFWD3Q6PCD5 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 AL121829.2-201ENST00000620908 328 ntBASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFWD3Q6PCD5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 UBE2SP1-201ENST00000450587 669 ntBASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFWD3Q6PCD5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFWD3Q6PCD5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFWD3Q6PCD5 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.52■□□□□ 0.87
RFWD3Q6PCD5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RFWD3Q6PCD5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFWD3Q6PCD5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFWD3Q6PCD5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFWD3Q6PCD5 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms