Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 AC005082.1-201ENST00000413042 2259 ntBASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PPP4R4Q6NUP7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PPP4R4Q6NUP7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PPP4R4Q6NUP7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
PPP4R4Q6NUP7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
PPP4R4Q6NUP7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PPP4R4Q6NUP7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 POU5F1P4-201ENST00000413175 1085 ntBASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.83■□□□□ 0.6
PPP4R4Q6NUP7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 MFSD11-216ENST00000590393 1141 ntBASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PPP4R4Q6NUP7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms