Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
ABCA4P78363 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.97■□□□□ 0.31
ABCA4P78363 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.97■□□□□ 0.31
ABCA4P78363 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
ABCA4P78363 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.97■□□□□ 0.31
ABCA4P78363 FSCN1P1-201ENST00000568912 1481 ntBASIC16.97■□□□□ 0.31
ABCA4P78363 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.97■□□□□ 0.31
ABCA4P78363 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.97■□□□□ 0.31
ABCA4P78363 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.97■□□□□ 0.31
ABCA4P78363 B3GAT3P1-201ENST00000471720 806 ntBASIC16.97■□□□□ 0.31
ABCA4P78363 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.97■□□□□ 0.31
ABCA4P78363 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
ABCA4P78363 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA4P78363 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.97■□□□□ 0.31
ABCA4P78363 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.96■□□□□ 0.31
ABCA4P78363 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 KRT18P56-201ENST00000507275 550 ntBASIC16.96■□□□□ 0.31
ABCA4P78363 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.96■□□□□ 0.31
ABCA4P78363 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.96■□□□□ 0.31
ABCA4P78363 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
ABCA4P78363 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
ABCA4P78363 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.96■□□□□ 0.31
ABCA4P78363 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 AP005242.2-201ENST00000580065 1175 ntBASIC16.96■□□□□ 0.31
ABCA4P78363 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ABCA4P78363 AL358472.4-201ENST00000633140 710 ntBASIC16.96■□□□□ 0.31
ABCA4P78363 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC16.96■□□□□ 0.31
ABCA4P78363 AC012676.1-201ENST00000574705 1949 ntBASIC16.96■□□□□ 0.3
ABCA4P78363 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
ABCA4P78363 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCA4P78363 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 ECEL1P2-202ENST00000465689 757 ntBASIC16.95■□□□□ 0.3
ABCA4P78363 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.95■□□□□ 0.3
ABCA4P78363 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
ABCA4P78363 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.95■□□□□ 0.3
ABCA4P78363 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
ABCA4P78363 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
ABCA4P78363 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 DUSP5P1-201ENST00000441325 1139 ntBASIC16.95■□□□□ 0.3
ABCA4P78363 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCA4P78363 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCA4P78363 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.94■□□□□ 0.3
ABCA4P78363 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ABCA4P78363 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.94■□□□□ 0.3
ABCA4P78363 AC104076.2-201ENST00000448912 469 ntBASIC16.94■□□□□ 0.3
ABCA4P78363 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCA4P78363 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCA4P78363 SMG8-203ENST00000578922 2178 ntBASIC16.94■□□□□ 0.3
ABCA4P78363 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.94■□□□□ 0.3
ABCA4P78363 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCA4P78363 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
ABCA4P78363 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms