Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.09■□□□□ 0.65
FOXA1P55317 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.09■□□□□ 0.65
FOXA1P55317 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
FOXA1P55317 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
FOXA1P55317 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
FOXA1P55317 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.08■□□□□ 0.65
FOXA1P55317 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA1P55317 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.08■□□□□ 0.65
FOXA1P55317 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.08■□□□□ 0.65
FOXA1P55317 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.08■□□□□ 0.64
FOXA1P55317 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.08■□□□□ 0.64
FOXA1P55317 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.08■□□□□ 0.64
FOXA1P55317 IKBKGP1-201ENST00000612193 1073 ntBASIC19.08■□□□□ 0.64
FOXA1P55317 AL050303.2-201ENST00000619798 666 ntBASIC19.08■□□□□ 0.64
FOXA1P55317 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
FOXA1P55317 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.08■□□□□ 0.64
FOXA1P55317 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA1P55317 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.08■□□□□ 0.64
FOXA1P55317 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
FOXA1P55317 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
FOXA1P55317 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.07■□□□□ 0.64
FOXA1P55317 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
FOXA1P55317 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 GPX1P1-201ENST00000388829 606 ntBASIC19.07■□□□□ 0.64
FOXA1P55317 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.07■□□□□ 0.64
FOXA1P55317 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.07■□□□□ 0.64
FOXA1P55317 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.07■□□□□ 0.64
FOXA1P55317 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA1P55317 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
FOXA1P55317 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.06■□□□□ 0.64
FOXA1P55317 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
FOXA1P55317 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.06■□□□□ 0.64
FOXA1P55317 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.06■□□□□ 0.64
FOXA1P55317 AC073111.5-205ENST00000641717 521 ntBASIC19.06■□□□□ 0.64
FOXA1P55317 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.06■□□□□ 0.64
FOXA1P55317 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.06■□□□□ 0.64
FOXA1P55317 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA1P55317 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.06■□□□□ 0.64
FOXA1P55317 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
FOXA1P55317 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA1P55317 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.05■□□□□ 0.64
FOXA1P55317 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA1P55317 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA1P55317 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA1P55317 LSM12P1-201ENST00000411836 588 ntBASIC19.05■□□□□ 0.64
FOXA1P55317 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.05■□□□□ 0.64
FOXA1P55317 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 AC133552.2-202ENST00000575694 574 ntBASIC19.05■□□□□ 0.64
FOXA1P55317 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.05■□□□□ 0.64
FOXA1P55317 AC080038.1-201ENST00000611274 1154 ntBASIC19.05■□□□□ 0.64
FOXA1P55317 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.05■□□□□ 0.64
FOXA1P55317 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.05■□□□□ 0.64
FOXA1P55317 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA1P55317 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
FOXA1P55317 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms