Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
COL8A1P27658 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COL8A1P27658 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.25■□□□□ 0.35
COL8A1P27658 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.24■□□□□ 0.35
COL8A1P27658 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.24■□□□□ 0.35
COL8A1P27658 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.24■□□□□ 0.35
COL8A1P27658 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.24■□□□□ 0.35
COL8A1P27658 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL8A1P27658 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.24■□□□□ 0.35
COL8A1P27658 AC023511.2-201ENST00000618803 211 ntBASIC17.24■□□□□ 0.35
COL8A1P27658 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.24■□□□□ 0.35
COL8A1P27658 AL445675.2-201ENST00000620291 557 ntBASIC17.24■□□□□ 0.35
COL8A1P27658 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.24■□□□□ 0.35
COL8A1P27658 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL8A1P27658 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COL8A1P27658 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.23■□□□□ 0.35
COL8A1P27658 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 AL845331.1-201ENST00000424978 1190 ntBASIC17.23■□□□□ 0.35
COL8A1P27658 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
COL8A1P27658 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL8A1P27658 RN7SL510P-201ENST00000581311 263 ntBASIC17.23■□□□□ 0.35
COL8A1P27658 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL8A1P27658 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL8A1P27658 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL8A1P27658 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.22■□□□□ 0.35
COL8A1P27658 AC004980.1-204ENST00000429707 299 ntBASIC17.22■□□□□ 0.35
COL8A1P27658 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.22■□□□□ 0.35
COL8A1P27658 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.22■□□□□ 0.35
COL8A1P27658 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 AL023973.1-201ENST00000624619 620 ntBASIC17.22■□□□□ 0.35
COL8A1P27658 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL8A1P27658 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL8A1P27658 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
COL8A1P27658 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL8A1P27658 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL8A1P27658 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL8A1P27658 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 KRT18P38-201ENST00000449496 1282 ntBASIC17.21■□□□□ 0.35
COL8A1P27658 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.21■□□□□ 0.35
COL8A1P27658 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.21■□□□□ 0.35
COL8A1P27658 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.21■□□□□ 0.35
COL8A1P27658 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.21■□□□□ 0.35
COL8A1P27658 VENTXP5-201ENST00000523979 775 ntBASIC17.21■□□□□ 0.35
COL8A1P27658 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
COL8A1P27658 AL441883.1-201ENST00000566170 1045 ntBASIC17.21■□□□□ 0.35
COL8A1P27658 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.21■□□□□ 0.35
COL8A1P27658 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.21■□□□□ 0.35
COL8A1P27658 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL8A1P27658 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.21■□□□□ 0.35
COL8A1P27658 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL8A1P27658 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.21■□□□□ 0.35
COL8A1P27658 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL8A1P27658 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms