Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX3O95343 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 CROCCP5-201ENST00000436658 830 ntBASIC19.26■□□□□ 0.67
SIX3O95343 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX3O95343 AC026185.1-201ENST00000445748 174 ntBASIC19.26■□□□□ 0.67
SIX3O95343 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.26■□□□□ 0.67
SIX3O95343 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.26■□□□□ 0.67
SIX3O95343 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SIX3O95343 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.26■□□□□ 0.67
SIX3O95343 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SIX3O95343 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SIX3O95343 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX3O95343 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
SIX3O95343 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX3O95343 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 Z82202.1-201ENST00000623446 1880 ntBASIC19.25■□□□□ 0.67
SIX3O95343 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.25■□□□□ 0.67
SIX3O95343 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX3O95343 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SIX3O95343 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX3O95343 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX3O95343 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SIX3O95343 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX3O95343 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.24■□□□□ 0.67
SIX3O95343 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
SIX3O95343 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX3O95343 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX3O95343 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.23■□□□□ 0.67
SIX3O95343 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX3O95343 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX3O95343 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.23■□□□□ 0.67
SIX3O95343 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.23■□□□□ 0.67
SIX3O95343 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.23■□□□□ 0.67
SIX3O95343 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX3O95343 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX3O95343 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SIX3O95343 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX3O95343 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms