Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SLC28A1O00337 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.97■□□□□ 0.63
SLC28A1O00337 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.97■□□□□ 0.63
SLC28A1O00337 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.97■□□□□ 0.63
SLC28A1O00337 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SLC28A1O00337 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC28A1O00337 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.97■□□□□ 0.63
SLC28A1O00337 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC28A1O00337 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SLC28A1O00337 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.96■□□□□ 0.63
SLC28A1O00337 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.96■□□□□ 0.63
SLC28A1O00337 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SLC28A1O00337 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC28A1O00337 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.95■□□□□ 0.62
SLC28A1O00337 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.95■□□□□ 0.62
SLC28A1O00337 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.95■□□□□ 0.62
SLC28A1O00337 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 GPX1P1-201ENST00000388829 606 ntBASIC18.95■□□□□ 0.62
SLC28A1O00337 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.95■□□□□ 0.62
SLC28A1O00337 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SLC28A1O00337 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC28A1O00337 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC28A1O00337 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC28A1O00337 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.94■□□□□ 0.62
SLC28A1O00337 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SLC28A1O00337 AC080038.1-201ENST00000611274 1154 ntBASIC18.94■□□□□ 0.62
SLC28A1O00337 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.94■□□□□ 0.62
SLC28A1O00337 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC28A1O00337 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC28A1O00337 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC28A1O00337 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SLC28A1O00337 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SLC28A1O00337 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SLC28A1O00337 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.93■□□□□ 0.62
SLC28A1O00337 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SLC28A1O00337 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.93■□□□□ 0.62
SLC28A1O00337 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.93■□□□□ 0.62
SLC28A1O00337 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
SLC28A1O00337 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC28A1O00337 MKRN4P-201ENST00000444706 1521 ntBASIC18.93■□□□□ 0.62
SLC28A1O00337 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms