Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC005224.3-201ENST00000584683 2140 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC022325.1-201ENST00000502748 2199 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AL133260.1-201ENST00000405720 405 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 RNU2-22P-201ENST00000411266 212 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC245096.1-201ENST00000413104 546 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC021876.1-201ENST00000425959 359 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 RPL12P49-201ENST00000441100 121 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 REG1CP-206ENST00000447469 496 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 SEPT7P3-201ENST00000455017 621 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC099670.1-201ENST00000455141 783 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 ACA64.4-201ENST00000459070 127 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AP002371.1-201ENST00000463604 433 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 CR383656.1-201ENST00000484916 377 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 RN7SL612P-201ENST00000497704 295 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 NACAP5-201ENST00000509863 636 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC027026.1-201ENST00000532323 742 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 HNRNPCP1-201ENST00000556181 766 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC012368.3-201ENST00000604190 219 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 RPSAP75-201ENST00000605848 301 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
VPS39Q96JC1 AC112255.1-201ENST00000624070 2493 ntBASIC6.02□□□□□ -1.45
VPS39Q96JC1 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS39Q96JC1 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC119674.1-202ENST00000641333 1860 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 OR56A4-201ENST00000330728 1209 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL096829.1-201ENST00000413677 457 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 RPL12P12-201ENST00000424633 501 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL590399.2-201ENST00000427536 309 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL590004.3-202ENST00000445883 451 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 CTSLP6-201ENST00000458273 1002 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 RPS7P10-201ENST00000464254 603 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 RN7SL836P-201ENST00000476140 296 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 TRBV8-1-201ENST00000481590 279 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC083795.1-201ENST00000491760 320 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 SNX18P25-201ENST00000510539 758 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 RN7SKP288-201ENST00000516227 268 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS39Q96JC1 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 AP005136.2-201ENST00000583253 1049 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 WBP1LP11-201ENST00000586141 328 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS39Q96JC1 QTRT1P1-201ENST00000604344 1078 ntBASIC6.01□□□□□ -1.45
VPS39Q96JC1 AL451049.1-201ENST00000608672 497 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms