Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC091874.2-201ENST00000505889 720 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC136777.2-201ENST00000522979 358 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AP001284.1-201ENST00000528393 2118 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC090651.1-201ENST00000567865 634 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC009779.8-202ENST00000607990 932 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC010809.3-201ENST00000621310 641 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AL683826.1-201ENST00000624104 627 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 CASC19-274ENST00000642018 970 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AP005435.3-201ENST00000531260 3198 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 TCP11X1-202ENST00000622971 1372 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 SNORA21-201ENST00000362423 132 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 MIR1275-201ENST00000408770 80 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL096829.1-201ENST00000413677 457 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL590399.2-201ENST00000427536 309 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 RPSAP65-201ENST00000429660 595 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 RPL5P7-201ENST00000444235 813 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL512593.1-201ENST00000444758 779 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC002553.3-201ENST00000453002 341 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 RAB28P2-201ENST00000454299 641 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 RN7SL352P-201ENST00000466002 277 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 OR7E99P-201ENST00000505750 922 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC023389.2-201ENST00000580031 955 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 MIR4502-201ENST00000580432 81 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC124916.2-201ENST00000604416 224 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC073389.3-201ENST00000609434 935 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC092681.3-201ENST00000609463 678 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL596275.2-207ENST00000641188 675 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AC015689.2-201ENST00000528172 1738 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL121768.1-201ENST00000613917 2544 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.36□□□□□ -1.55
SKA3Q8IX90 AL731532.1-201ENST00000623972 4236 ntBASIC5.36□□□□□ -1.55
SKA3Q8IX90 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SKA3Q8IX90 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms