Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.73□□□□□ -1.17
HOXC9P31274 AC073610.1-201ENST00000489971 396 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.73□□□□□ -1.17
HOXC9P31274 IGLV2-28-201ENST00000520681 304 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC7.73□□□□□ -1.17
HOXC9P31274 FKBP1AP1-201ENST00000594588 318 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 AC004808.2-201ENST00000627965 773 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 CAST-222ENST00000508579 1758 ntTSL 2 BASIC7.73□□□□□ -1.17
HOXC9P31274 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
HOXC9P31274 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
HOXC9P31274 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.72□□□□□ -1.17
HOXC9P31274 AC015983.1-201ENST00000441577 373 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC7.72□□□□□ -1.17
HOXC9P31274 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.72□□□□□ -1.17
HOXC9P31274 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 RN7SKP288-201ENST00000516227 268 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 AC244502.2-201ENST00000543361 851 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.72□□□□□ -1.17
HOXC9P31274 HSPE1P2-201ENST00000554777 306 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 AC004836.1-201ENST00000623032 634 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 AL390318.1-201ENST00000624564 687 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
HOXC9P31274 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 IMMTP1-201ENST00000435590 2219 ntBASIC7.72□□□□□ -1.17
HOXC9P31274 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
HOXC9P31274 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.72□□□□□ -1.17
HOXC9P31274 CASC19-248ENST00000641674 1356 ntBASIC7.71□□□□□ -1.17
HOXC9P31274 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.17
HOXC9P31274 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
HOXC9P31274 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
HOXC9P31274 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
HOXC9P31274 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.71□□□□□ -1.17
HOXC9P31274 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.71□□□□□ -1.17
HOXC9P31274 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
HOXC9P31274 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
HOXC9P31274 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
HOXC9P31274 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
HOXC9P31274 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
HOXC9P31274 U3.7-201ENST00000363668 216 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.71□□□□□ -1.18
HOXC9P31274 NENFP1-201ENST00000419476 466 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AC007394.1-201ENST00000421941 531 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.71□□□□□ -1.18
HOXC9P31274 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 AL450023.1-201ENST00000450868 751 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AC004129.2-201ENST00000457229 287 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AC087672.1-201ENST00000479876 766 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 RN7SL570P-201ENST00000484405 292 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AL035690.1-201ENST00000490892 383 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC7.71□□□□□ -1.18
HOXC9P31274 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.71□□□□□ -1.18
HOXC9P31274 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC7.71□□□□□ -1.18
HOXC9P31274 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.71□□□□□ -1.18
HOXC9P31274 AC211433.2-201ENST00000608433 387 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC7.71□□□□□ -1.18
HOXC9P31274 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 AL590763.1-201ENST00000398297 1545 ntBASIC7.71□□□□□ -1.18
HOXC9P31274 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.71□□□□□ -1.18
HOXC9P31274 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
HOXC9P31274 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
HOXC9P31274 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
HOXC9P31274 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.7□□□□□ -1.18
HOXC9P31274 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
HOXC9P31274 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HOXC9P31274 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.7□□□□□ -1.18
HOXC9P31274 AL353626.3-201ENST00000413399 657 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 HMGA1P8-201ENST00000414130 321 ntBASIC7.7□□□□□ -1.18
HOXC9P31274 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.7□□□□□ -1.18
HOXC9P31274 AC019205.1-201ENST00000421830 730 ntBASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms