Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC7.1□□□□□ -1.27
SMARCA1P28370 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC010547.7-201ENST00000570323 333 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 VN1R81P-201ENST00000602085 372 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC006249.1-201ENST00000621223 471 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC073488.3-201ENST00000631611 778 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC027279.1-201ENST00000568885 4284 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 AC068446.1-201ENST00000556425 1549 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 AL078595.2-201ENST00000605309 1780 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SMARCA1P28370 AC010401.2-201ENST00000575137 4934 ntBASIC7.1□□□□□ -1.27
SMARCA1P28370 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.1□□□□□ -1.27
SMARCA1P28370 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AL512283.1-201ENST00000606756 1384 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC011504.1-201ENST00000623331 4103 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC7.09□□□□□ -1.27
SMARCA1P28370 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
SMARCA1P28370 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 Y_RNA.62-201ENST00000362840 99 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 RNU1-134P-201ENST00000362935 165 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AL589994.1-201ENST00000404962 340 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AL589655.1-201ENST00000405398 482 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 PTCD2P2-201ENST00000415579 1095 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 RPL12P12-201ENST00000424633 501 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC074367.1-201ENST00000438685 1125 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC117394.1-201ENST00000477323 567 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 PFN2-209ENST00000481275 560 ntTSL 4 BASIC7.09□□□□□ -1.27
SMARCA1P28370 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC7.09□□□□□ -1.27
SMARCA1P28370 RN7SKP35-201ENST00000517210 151 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 FAU-203ENST00000525297 355 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 OR10D4P-201ENST00000525892 951 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AP003049.1-201ENST00000529418 457 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 LINC00557-201ENST00000563184 1279 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC007346.1-201ENST00000569208 867 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC7.09□□□□□ -1.27
SMARCA1P28370 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 AC040174.2-201ENST00000602701 465 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC011458.1-201ENST00000604034 617 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 AC092681.3-201ENST00000609463 678 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 RN7SL261P-201ENST00000613441 282 ntBASIC7.09□□□□□ -1.27
SMARCA1P28370 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.09□□□□□ -1.27
SMARCA1P28370 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SMARCA1P28370 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
SMARCA1P28370 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC7.09□□□□□ -1.28
SMARCA1P28370 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.08□□□□□ -1.28
SMARCA1P28370 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.08□□□□□ -1.28
SMARCA1P28370 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC7.08□□□□□ -1.28
SMARCA1P28370 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
SMARCA1P28370 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
SMARCA1P28370 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC7.08□□□□□ -1.28
SMARCA1P28370 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 AL929601.4-201ENST00000613011 1341 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC7.08□□□□□ -1.28
SMARCA1P28370 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.08□□□□□ -1.28
SMARCA1P28370 LCN1P2-201ENST00000372030 223 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 SNORA70H-201ENST00000383910 135 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 SNORA70J-201ENST00000384182 135 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 MIR621-201ENST00000384919 96 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
SMARCA1P28370 RPL7P58-201ENST00000402913 758 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.08□□□□□ -1.28
SMARCA1P28370 AL096829.1-201ENST00000413677 457 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SMARCA1P28370 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC7.08□□□□□ -1.28
SMARCA1P28370 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC7.08□□□□□ -1.28
SMARCA1P28370 AL353662.1-201ENST00000439099 327 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 AC073072.2-201ENST00000447425 348 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 PPIAP27-201ENST00000453800 265 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 AC092865.4-201ENST00000477936 615 ntBASIC7.08□□□□□ -1.28
SMARCA1P28370 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms