Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 RNA5SP65-201ENST00000363166 119 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 TAS2R15P-201ENST00000390674 928 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 MIR1204-201ENST00000408388 67 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 MIR1178-201ENST00000408396 91 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 LUZP4P1-201ENST00000415420 344 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.19□□□□□ -1.26
COL6A1P12109 AC073464.3-201ENST00000422564 712 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AL121882.1-201ENST00000422893 417 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 VDAC1P2-201ENST00000423609 850 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 IGLV3-4-201ENST00000432300 244 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.19□□□□□ -1.26
COL6A1P12109 LDHAP2-201ENST00000437325 985 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 RPS26P41-201ENST00000450370 284 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 CST12P-201ENST00000457644 362 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AC078857.1-201ENST00000469870 667 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 METTL15P1-201ENST00000481421 1045 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.19□□□□□ -1.26
COL6A1P12109 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 AC010627.1-201ENST00000503819 1294 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 RN7SKP287-201ENST00000516546 266 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 NPM1P52-201ENST00000518264 846 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AC104997.1-201ENST00000519761 717 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 CETN3-206ENST00000522864 738 ntTSL 3 BASIC7.19□□□□□ -1.26
COL6A1P12109 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 AC093424.1-201ENST00000604999 338 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AC135178.6-201ENST00000605314 398 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 U6.48-201ENST00000618523 106 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AL163051.2-201ENST00000618976 735 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AP003476.1-201ENST00000623984 516 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 AP000577.1-201ENST00000624366 878 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 OR7E91P-202ENST00000642062 1198 ntBASIC7.19□□□□□ -1.26
COL6A1P12109 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.19□□□□□ -1.26
COL6A1P12109 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 CYP2G2P-201ENST00000594920 1485 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC7.18□□□□□ -1.26
COL6A1P12109 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 SHQ1P1-201ENST00000437111 1544 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 MFSD8-217ENST00000641178 4374 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL6A1P12109 OR4K17-201ENST00000315543 1032 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL6A1P12109 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 RNU6-1331P-201ENST00000363658 106 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 MIR937-201ENST00000401271 86 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AC245452.2-201ENST00000435222 392 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AC023141.3-201ENST00000436698 278 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AL645931.1-201ENST00000439737 410 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC7.18□□□□□ -1.26
COL6A1P12109 RRM2P4-201ENST00000441721 562 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 HMGN1P36-201ENST00000446623 298 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AL161722.1-201ENST00000446972 1032 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC7.18□□□□□ -1.26
COL6A1P12109 AC011476.1-201ENST00000466725 307 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 RN7SL643P-201ENST00000471845 291 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AC098847.1-201ENST00000473094 348 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 MTCO2P9-201ENST00000503214 694 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC7.18□□□□□ -1.26
COL6A1P12109 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.18□□□□□ -1.26
COL6A1P12109 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC7.18□□□□□ -1.26
COL6A1P12109 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC7.18□□□□□ -1.26
COL6A1P12109 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 MIR6719-201ENST00000622428 87 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AP006248.3-201ENST00000623580 594 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AP000676.4-201ENST00000624659 623 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC7.18□□□□□ -1.26
COL6A1P12109 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC7.18□□□□□ -1.26
COL6A1P12109 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms