Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 FO681491.1-202ENST00000623392 737 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AC009950.2-201ENST00000636548 183 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXD4P09016 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 NEK2P2-201ENST00000438441 1338 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 Z95114.1-201ENST00000624264 14574 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXD4P09016 RNA5SP478-201ENST00000364657 115 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 SNORA17A-201ENST00000391185 133 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 AC073109.1-201ENST00000445066 978 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 PPIAP19-201ENST00000486414 492 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 AC060775.1-201ENST00000518241 520 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 AC009120.3-201ENST00000563335 499 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 LINC00556-201ENST00000569603 412 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 AC100767.2-201ENST00000604840 693 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXD4P09016 SNORA17.5-201ENST00000630429 132 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 AL359976.1-201ENST00000418655 3528 ntBASIC5.6□□□□□ -1.51
HOXD4P09016 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.6□□□□□ -1.51
HOXD4P09016 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXD4P09016 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
HOXD4P09016 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXD4P09016 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXD4P09016 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
HOXD4P09016 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXD4P09016 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXD4P09016 SNORA21-201ENST00000362423 132 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 GNG5P2-201ENST00000372054 207 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 RNA5SP156-201ENST00000410250 110 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 CDY17P-201ENST00000414121 1282 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC016769.2-201ENST00000414815 475 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 RPS7P8-201ENST00000418311 581 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 RPS17P17-201ENST00000419392 409 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 CHEK2P5-201ENST00000423877 246 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 RPL23AP19-201ENST00000436229 369 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 ATP5LP2-201ENST00000440646 311 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 CYCSP51-201ENST00000443545 318 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC002553.3-201ENST00000453002 341 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 VPS25P1-201ENST00000455691 508 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 SNX18P26-201ENST00000458433 740 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 NXT1P1-201ENST00000458481 316 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.59□□□□□ -1.51
HOXD4P09016 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 RPA2P1-201ENST00000556557 721 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXD4P09016 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 AC023389.2-201ENST00000580031 955 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC090236.2-201ENST00000587933 1101 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 AC109309.2-201ENST00000612597 332 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 MIR6886-201ENST00000619864 61 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXD4P09016 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms