Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 HIGD1AP5-201ENST00000529959 259 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 MAPK10-338ENST00000641647 3362 ntBASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 CBX1P5-201ENST00000475330 559 ntBASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AOX3P-204ENST00000491025 2107 ntBASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AC024558.1-201ENST00000505008 528 ntBASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AC007066.2-202ENST00000566531 914 ntBASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
SHROOM4Q9ULL8 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AL139805.2-201ENST00000455305 2433 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 SELENOWP1-201ENST00000322792 252 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 VDAC1P6-201ENST00000430062 855 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 EEF1B2P5-201ENST00000444820 548 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AL645937.3-201ENST00000453647 936 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AC114728.1-201ENST00000488289 483 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AC008953.1-201ENST00000497334 318 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 RNA5SP92-201ENST00000516437 110 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AC110056.1-201ENST00000525759 911 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 KCTD9P4-201ENST00000526766 1166 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AP000676.2-201ENST00000529711 301 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 AC087565.3-203ENST00000641018 837 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 OR11H2-202ENST00000641517 1085 ntBASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC11.3□□□□□ -0.6
SHROOM4Q9ULL8 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 POT1-202ENST00000393329 3950 ntTSL 5 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 MAPK10-304ENST00000641341 3984 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 RPL37P18-201ENST00000411602 243 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 BZW1P1-201ENST00000454901 1240 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 FTH1P2-201ENST00000466086 412 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AL355032.1-201ENST00000472981 438 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 OR7E157P-201ENST00000494376 911 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AC008629.2-201ENST00000503783 483 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 OR4H6P-201ENST00000563771 921 ntBASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
SHROOM4Q9ULL8 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 AL161756.3-201ENST00000641216 2071 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 MIR550A3-201ENST00000390735 95 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 CAV1-204ENST00000393470 598 ntTSL 4 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 AC113412.1-201ENST00000425840 504 ntBASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC11.28□□□□□ -0.6
SHROOM4Q9ULL8 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms