Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
USP39Q53GS9 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.64□□□□□ -1.35
USP39Q53GS9 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC003045.1-201ENST00000398779 713 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 MIR541-201ENST00000401360 84 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 SNORA77.2-201ENST00000408571 112 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC092865.3-201ENST00000425390 1026 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 RPL7P34-201ENST00000433316 712 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 MTND1P34-201ENST00000438556 671 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 OR2L9P-201ENST00000444456 913 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 MTND5P8-201ENST00000449817 1083 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 TVP23CP1-201ENST00000450317 639 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 HGF-207ENST00000453018 721 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 BZW1P1-201ENST00000454901 1240 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AC009963.3-201ENST00000458090 486 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC104164.3-201ENST00000467363 1258 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC087894.1-201ENST00000538359 518 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.64□□□□□ -1.35
USP39Q53GS9 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC234772.3-201ENST00000602277 528 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC004805.3-201ENST00000603178 310 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AC139493.1-201ENST00000604368 397 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC025171.4-201ENST00000607250 1047 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AC008121.2-201ENST00000614647 523 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 U1.41-201ENST00000617626 165 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AP002791.1-201ENST00000623291 381 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AL357140.4-201ENST00000636827 412 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC093536.2-201ENST00000565257 1406 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 AC110597.1-201ENST00000562669 3176 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.64□□□□□ -1.35
USP39Q53GS9 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
USP39Q53GS9 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 AL359195.2-201ENST00000623657 4412 ntBASIC6.64□□□□□ -1.35
USP39Q53GS9 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
USP39Q53GS9 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 RN7SKP275-201ENST00000364626 301 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 RNU6-1257P-201ENST00000384625 110 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 XKRYP1-201ENST00000423438 492 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 VN1R21P-201ENST00000426703 765 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 XKRYP2-201ENST00000432915 492 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 MTND4P6-201ENST00000438297 472 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC020898.1-201ENST00000474167 787 ntBASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms