Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 USP9YP3-201ENST00000434481 1766 ntBASIC9.63□□□□□ -0.87
CUX1P39880 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
CUX1P39880 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
CUX1P39880 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
CUX1P39880 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC9.62□□□□□ -0.87
CUX1P39880 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC9.62□□□□□ -0.87
CUX1P39880 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
CUX1P39880 RPL23P2-201ENST00000320371 421 ntBASIC9.62□□□□□ -0.87
CUX1P39880 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 AC108161.1-201ENST00000461060 402 ntBASIC9.62□□□□□ -0.87
CUX1P39880 AL603882.1-201ENST00000463059 681 ntBASIC9.62□□□□□ -0.87
CUX1P39880 AC090424.1-201ENST00000535243 736 ntBASIC9.62□□□□□ -0.87
CUX1P39880 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC9.62□□□□□ -0.87
CUX1P39880 AL049539.1-201ENST00000611964 459 ntBASIC9.62□□□□□ -0.87
CUX1P39880 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
CUX1P39880 AL121768.1-201ENST00000613917 2544 ntBASIC9.62□□□□□ -0.87
CUX1P39880 ZNF658B-201ENST00000602828 3408 ntBASIC9.62□□□□□ -0.87
CUX1P39880 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
CUX1P39880 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
CUX1P39880 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 AL589647.1-201ENST00000402485 466 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC9.61□□□□□ -0.87
CUX1P39880 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC9.61□□□□□ -0.87
CUX1P39880 OR1F2P-201ENST00000570470 933 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 RBM22P1-201ENST00000578589 1214 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 AC133644.2-201ENST00000608142 540 ntBASIC9.61□□□□□ -0.87
CUX1P39880 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC9.61□□□□□ -0.87
CUX1P39880 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 AC005294.1-201ENST00000355509 281 ntBASIC9.61□□□□□ -0.87
CUX1P39880 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 MIR765-201ENST00000390226 114 ntBASIC9.61□□□□□ -0.87
CUX1P39880 RPS26P13-201ENST00000419030 330 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC9.61□□□□□ -0.87
CUX1P39880 IGLV2-34-201ENST00000490007 283 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AC011497.2-201ENST00000600255 639 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AP002505.2-201ENST00000623585 696 ntBASIC9.61□□□□□ -0.87
CUX1P39880 AP001784.1-201ENST00000624107 428 ntBASIC9.61□□□□□ -0.87
CUX1P39880 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
CUX1P39880 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
CUX1P39880 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
CUX1P39880 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC9.6□□□□□ -0.87
CUX1P39880 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 RPL7P45-201ENST00000455851 743 ntBASIC9.6□□□□□ -0.87
CUX1P39880 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC9.6□□□□□ -0.87
CUX1P39880 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC9.6□□□□□ -0.87
CUX1P39880 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
CUX1P39880 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX1P39880 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX1P39880 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC9.6□□□□□ -0.87
CUX1P39880 AC131649.2-201ENST00000624925 4439 ntBASIC9.6□□□□□ -0.87
CUX1P39880 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX1P39880 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 AL731534.1-201ENST00000434711 269 ntBASIC9.59□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms