Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL353626.3-201ENST00000413399 657 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 ELOCP3-201ENST00000439303 348 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 Z80107.2-201ENST00000445127 392 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC108161.1-201ENST00000461060 402 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC078878.1-201ENST00000539832 958 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC7.51□□□□□ -1.21
COL18A1P39060 AC090527.3-201ENST00000619041 548 ntBASIC7.51□□□□□ -1.21
COL18A1P39060 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL18A1P39060 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL18A1P39060 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.5□□□□□ -1.21
COL18A1P39060 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.5□□□□□ -1.21
COL18A1P39060 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.5□□□□□ -1.21
COL18A1P39060 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC7.5□□□□□ -1.21
COL18A1P39060 MIR765-201ENST00000390226 114 ntBASIC7.5□□□□□ -1.21
COL18A1P39060 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.5□□□□□ -1.21
COL18A1P39060 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC7.5□□□□□ -1.21
COL18A1P39060 ABCA11P-202ENST00000504019 2110 ntBASIC7.5□□□□□ -1.21
COL18A1P39060 AC024451.1-201ENST00000508013 779 ntBASIC7.5□□□□□ -1.21
COL18A1P39060 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.5□□□□□ -1.21
COL18A1P39060 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.5□□□□□ -1.21
COL18A1P39060 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.5□□□□□ -1.21
COL18A1P39060 MIR6810-201ENST00000622701 70 ntBASIC7.5□□□□□ -1.21
COL18A1P39060 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.5□□□□□ -1.21
COL18A1P39060 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC7.5□□□□□ -1.21
COL18A1P39060 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.5□□□□□ -1.21
COL18A1P39060 AC112255.1-201ENST00000624070 2493 ntBASIC7.5□□□□□ -1.21
COL18A1P39060 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL18A1P39060 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.49□□□□□ -1.21
COL18A1P39060 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.49□□□□□ -1.21
COL18A1P39060 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC7.49□□□□□ -1.21
COL18A1P39060 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 AC010478.1-201ENST00000601500 6762 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL18A1P39060 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 RN7SKP104-201ENST00000362605 328 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 RN7SKP213-201ENST00000410746 298 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 RPL7P39-201ENST00000481157 744 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 DUTP1-201ENST00000493631 470 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.49□□□□□ -1.21
COL18A1P39060 AC147055.3-201ENST00000510547 851 ntBASIC7.49□□□□□ -1.21
COL18A1P39060 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.49□□□□□ -1.21
COL18A1P39060 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.49□□□□□ -1.21
COL18A1P39060 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.49□□□□□ -1.21
COL18A1P39060 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL18A1P39060 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL18A1P39060 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL18A1P39060 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL18A1P39060 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 AC092017.2-201ENST00000427600 362 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 RN7SL97P-201ENST00000486780 299 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 RNU6-941P-201ENST00000516346 108 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 MIR2117-201ENST00000516780 80 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.48□□□□□ -1.21
COL18A1P39060 DPPA3P2-202ENST00000557188 1219 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.48□□□□□ -1.21
COL18A1P39060 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC7.48□□□□□ -1.21
COL18A1P39060 AC073342.3-201ENST00000624211 193 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.48□□□□□ -1.21
COL18A1P39060 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.48□□□□□ -1.21
COL18A1P39060 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 AL359922.2-201ENST00000581788 3017 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 AL031595.3-201ENST00000624919 14262 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 RN7SKP151-201ENST00000410230 316 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 AC007568.1-201ENST00000422912 471 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC7.48□□□□□ -1.21
COL18A1P39060 RPL10P14-201ENST00000565265 298 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 AC069307.1-201ENST00000602820 447 ntBASIC7.48□□□□□ -1.21
COL18A1P39060 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.48□□□□□ -1.21
COL18A1P39060 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
COL18A1P39060 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL18A1P39060 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL18A1P39060 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 MFSD8-216ENST00000641147 4009 ntBASIC7.47□□□□□ -1.21
COL18A1P39060 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL18A1P39060 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms