Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC015799.1-201ENST00000622996 3122 ntBASIC5.62□□□□□ -1.51
SDC1P18827 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 AP000432.2-201ENST00000624164 2048 ntBASIC5.62□□□□□ -1.51
SDC1P18827 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.62□□□□□ -1.51
SDC1P18827 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SDC1P18827 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 RN7SKP78-201ENST00000364711 318 ntBASIC5.61□□□□□ -1.51
SDC1P18827 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SDC1P18827 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 AL034417.1-201ENST00000399343 800 ntBASIC5.61□□□□□ -1.51
SDC1P18827 FAM183DP-201ENST00000421987 399 ntBASIC5.61□□□□□ -1.51
SDC1P18827 KIF4CP-201ENST00000422742 1279 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.61□□□□□ -1.51
SDC1P18827 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 CRIP1P1-201ENST00000427567 185 ntBASIC5.61□□□□□ -1.51
SDC1P18827 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 AL136455.1-201ENST00000441083 1240 ntBASIC5.61□□□□□ -1.51
SDC1P18827 RBPJP7-201ENST00000442803 1447 ntBASIC5.61□□□□□ -1.51
SDC1P18827 RPL5P10-201ENST00000445207 894 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.61□□□□□ -1.51
SDC1P18827 RBPJP5-201ENST00000449433 1447 ntBASIC5.61□□□□□ -1.51
SDC1P18827 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 KF459542.1-201ENST00000450908 553 ntBASIC5.61□□□□□ -1.51
SDC1P18827 RN7SL254P-201ENST00000460609 284 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AC006539.1-201ENST00000481419 501 ntBASIC5.61□□□□□ -1.51
SDC1P18827 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 PDCL3P4-201ENST00000489621 720 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.61□□□□□ -1.51
SDC1P18827 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 PSG10P-201ENST00000501199 1500 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.61□□□□□ -1.51
SDC1P18827 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.61□□□□□ -1.51
SDC1P18827 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.61□□□□□ -1.51
SDC1P18827 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.61□□□□□ -1.51
SDC1P18827 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 AC123912.3-201ENST00000600907 1367 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AL513327.3-201ENST00000602618 469 ntBASIC5.61□□□□□ -1.51
SDC1P18827 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 AC092681.3-201ENST00000609463 678 ntBASIC5.61□□□□□ -1.51
SDC1P18827 uc_338.31-201ENST00000615595 186 ntBASIC5.61□□□□□ -1.51
SDC1P18827 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 HTR1DP1-201ENST00000616500 888 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AL512356.3-201ENST00000623005 461 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AL109924.4-201ENST00000623089 670 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AC022400.9-201ENST00000623633 273 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.61□□□□□ -1.51
SDC1P18827 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AP001153.1-201ENST00000641024 338 ntBASIC5.61□□□□□ -1.51
SDC1P18827 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.61□□□□□ -1.51
SDC1P18827 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
SDC1P18827 AC011933.2-201ENST00000578539 2790 ntBASIC5.61□□□□□ -1.51
SDC1P18827 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SDC1P18827 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.6□□□□□ -1.51
SDC1P18827 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 AL158152.1-201ENST00000602652 1435 ntBASIC5.6□□□□□ -1.51
SDC1P18827 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.6□□□□□ -1.51
SDC1P18827 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 SELENOWP1-201ENST00000322792 252 ntBASIC5.6□□□□□ -1.51
SDC1P18827 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 AL096711.1-201ENST00000404780 554 ntBASIC5.6□□□□□ -1.51
SDC1P18827 METTL15P3-201ENST00000415522 1221 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.6□□□□□ -1.51
SDC1P18827 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.6□□□□□ -1.51
SDC1P18827 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.6□□□□□ -1.51
SDC1P18827 BMS1P10-201ENST00000443754 1120 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 AL157777.1-201ENST00000468100 304 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.6□□□□□ -1.51
SDC1P18827 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.6□□□□□ -1.51
SDC1P18827 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 RN7SL568P-201ENST00000493069 298 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC112484.3-201ENST00000505910 329 ntBASIC5.6□□□□□ -1.51
SDC1P18827 RNU6-964P-201ENST00000516524 69 ntBASIC5.6□□□□□ -1.51
SDC1P18827 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
SDC1P18827 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms